Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20firmibasis_20[genbank_20GCA_5F000277485.1_202012-07- 10] 997 sequences; 30,559,666 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq128 93.3 1e-13 seq201 91.5 3e-13 seq226 89.7 1e-12 seq70 84.2 5e-11 >seq128 Length=109205 Score = 93.3 bits (102), Expect = 1e-13 Identities = 177/258 (69%), Gaps = 6/258 (2%) Strand=Plus/Minus Query 304882 CAATT--TACAATATCATATTGCAACATTAATGGATAATGAAATTGCTGGAATTATGCAG 304939 ||||| |||| | ||| | || |||| | ||||||||||| |||| | ||| Sbjct 33342 CAATTCCTACAGTTTCACGTGGCTACATATGTCGATAATGAAATACCTGGTCTACCACAG 33283 Query 304940 GCATCTCAAAGATCTGGCAGACCTTTAAAGGGTATTAGGCAACGCATTAAAGGTAAAGAG 304999 || ||| | ||||| ||||| || || ||| | ||||| | || ||||||||| Sbjct 33282 GCTCAACAACGTTCTGGTAGACCATTGAAATCGATTCGTCAACGTTTAAAGGGTAAAGAG 33223 Query 305000 GGTCGTATTCGAGGTAATCTAATGGGAAAACGTGTTGATTTTAGTGCAAGAAGTGTAATC 305059 ||| | || |||||||||| ||||| |||||||| ||||| ||| | | || || Sbjct 33222 GGTAGAATCAGAGGTAATCTTATGGGTAAACGTGTAGATTTCTCTGCTCGTACCGTCATT 33163 Query 305060 ACACCTGATTCTCAAATTAGTC--TTCATGAATTAGGAGTTCCAATTGAAATTGCTTTAA 305117 ||| | ||| ||||| || || || || |||| || ||| | ||||||| | | Sbjct 33162 ACAGCCGAT--CCAAATCTTTCAATTGATCAAGTAGGTGTACCACGTTCAATTGCTCTCA 33105 Query 305118 AACTAACATTTCCAGAGA 305135 | |||| | |||||||| Sbjct 33104 ATTTAACCTATCCAGAGA 33087 Score = 86.0 bits (94), Expect = 1e-11 Identities = 115/155 (74%), Gaps = 10/155 (6%) Strand=Plus/Minus Query 305336 TTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTATTA 305395 |||||| | |||||||| || ||||||||||||||||||| |||| ||||||| | Sbjct 32892 TTCAATCGTCAACCATCCCTTCATAAAATGTCTATGATGGGTCATCGTATCAAAGTTATG 32833 Query 305396 TC-TGGATTGACATTTCGATTAAATGTAAGTGCTTGTA----CGCCTTATAATGCGGATT 305450 | | | | || ||||| || ||| | | || ||| | || || ||||| |||| Sbjct 32832 CCATACAGT-ACTTTTCGTTTGAATCT---TTCT-GTAACCTCACCATACAATGCAGATT 32778 Query 305451 TTGATGGAGATGAAATGAATATGCATGTACCTCAA 305485 | ||||| |||||||||||| | |||||||| ||| Sbjct 32777 TCGATGGTGATGAAATGAATCTTCATGTACCACAA 32743 >seq201 Length=50797 Score = 91.5 bits (100), Expect = 3e-13 Identities = 121/168 (72%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 279074 AAACTTGATGATGCAAACTGGGCTGGAGGTCGTAAATCTCAAGAATGTGCTTTATTTCTT 279133 ||| | ||||||||||| ||||| || || |||||| | |||||| | || || | Sbjct 28159 AAATTGGATGATGCAAATTGGGCAGGTGGAAATAAATCAAAGGAATGTACATTGATTATA 28218 Query 279134 ACTGAGGGAGATTCTGCTGCTACATTTGCGATTGCTGGTTTATCTGTTATTGGTCGTGAT 279193 || ||||| |||||||| |||| || | || |||||| |||| | |||||| || Sbjct 28219 ACAGAGGGTGATTCTGCAAAATCATTAGCATTGGCAGGTTTAAGTGTTGTAGGTCGTAAT 28278 Query 279194 AAATATGGCGTATTTCCTTTAAGAGGTAAAGTAATTAATGCTCGTGAT 279241 ||| || || || || ||| | |||||| |||| |||| |||||| Sbjct 28279 TCATACGGTGTTTTCCCATTACGTGGTAAACTAATGAATGTACGTGAT 28326 >seq226 Length=37242 Score = 89.7 bits (98), Expect = 1e-12 Identities = 112/151 (74%), Gaps = 2/151 (1%) Strand=Plus/Plus Query 305336 TTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTATTA 305395 |||||| | ||||| || || |||||| | || || ||| | ||||| | | ||| | Sbjct 32332 TTCAATCGTCAACCTTCTCTTCATAAACTATCAATTATGTCACATAAGGCAAGAGTTATG 32391 Query 305396 TC-TGGATTGACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTTTGA 305454 | |||| ||||| || || |||| | ||| |||||| || || ||||| ||||| || Sbjct 32392 CCATGGAGA-ACATTACGTTTCAATGAATGTGTTTGTACACCATACAATGCAGATTTCGA 32450 Query 305455 TGGAGATGAAATGAATATGCATGTACCTCAA 305485 ||| ||||||||||| || ||| |||| ||| Sbjct 32451 TGGTGATGAAATGAACATTCATTTACCACAA 32481 >seq70 Length=164683 Score = 84.2 bits (92), Expect = 5e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 167202 AATATTTCAAAAGAGCACCTAAAATCTTTATTAATTATCATTACACCACCAGCATTATCG 167261 || |||| || || ||| | ||| || || || ||| | | ||||||| ||||| Sbjct 127767 AAAATTTGGAATGAACACATTAAAGTTTCATCAACACCCATCATAGCACCAGCGTTATCA 127826 Query 167262 AATTCATTCGCATAATTTGGTGCTGAAAATACAGTAACTAATTTACGATTGAAAAATAAT 167321 |||||| |||||||| || ||||| | ||||| |||| ||| || ||| ||| Sbjct 127827 AATTCACCAAAGTAATTTGGAGCGGAAAAGAGTGTAACCAATTGACGTTTAGCAAAGAAT 127886 Query 167322 TCATAACCATCTTCAACAACTTCATGGGC 167350 ||||||||||||||||| |||| ||| || Sbjct 127887 TCATAACCATCTTCAACGACTTGATGAGC 127915 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186797639579117