Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20firmibasis_20[genbank_20GCA_5F000277485.1_202012-07- 10] 997 sequences; 30,559,666 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq175 114 3e-20 seq6 114 3e-20 seq64 109 1e-18 seq224 96.9 8e-15 >seq175 Length=69793 Score = 114 bits (126), Expect = 3e-20 Identities = 138/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| ||||| || ||||| || ||||| ||||| ||| ||||||||| | ||| Sbjct 6219 AAAACTCTCACTGGTAAAACCATTACTTTAGAAGTAGAAGGTTCTGACAATATTGAAAAT 6160 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 ||||| || |||||||| || ||||| ||| || ||| ||| | ||||| ||| Sbjct 6159 GTAAAAACCAAAATTCAAGACAAGGAAGGTATTCCACCAGACCAACAACGTCTTATTTTC 6100 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || || || ||||||||||| | ||| | | ||||||||| | || || ||||| Sbjct 6099 GCTGGTAAACAATTGGAAGATGGTCGTACTCTTTCTGATTACAACATTCAAAAGGAGTCC 6040 Query 206365 ACTCTTCA 206372 ||||| || Sbjct 6039 ACTCTCCA 6032 Score = 105 bits (116), Expect = 2e-17 Identities = 136/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| ||||| || || || || ||| | ||||| ||| || ||||| |||| Sbjct 5991 AAAACTCTCACTGGTAAGACCATTACTCTTGAAGTTGAAGGTAGTGACAACATCGAGAAT 5932 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| ||||||||||| |||||||| ||| || ||| ||| | ||||| ||| Sbjct 5931 GTAAAGACCAAGATTCAAGATAAAGAAGGTATTCCACCAGACCAACAACGTCTTATTTTC 5872 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || || || ||||| ||||| | || || ||||||| || |||| || || || Sbjct 5871 GCTGGTAAACAATTGGAGGATGGCCGTACATTATCCGATTATAATATCCAAAAGGAATCA 5812 Query 206365 ACTCTTCA 206372 |||||||| Sbjct 5811 ACTCTTCA 5804 Score = 102 bits (112), Expect = 2e-16 Identities = 140/192 (73%), Gaps = 4/192 (2%) Strand=Plus/Minus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACA-CAGTC-GAA 206241 |||||| ||||| || || || ||||| |||||||| ||| || || | || | ||| Sbjct 5536 CAAAACCCTCACTGGTAAGACCATCACCTTGGAAGTTGAAGGTAGCGATAACATTGAGAA 5477 Query 206242 TCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATC 206301 | ||||| ||||||||||| |||||||| ||| || ||| |||||| | || Sbjct 5476 T--GTAAAAACCAAGATTCAAGACAAAGAAGGTATTCCACCAGACCAACAAAGATTGATT 5419 Query 206302 TTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAG 206361 ||||| || || || ||||||||||| | ||| | | ||||||||| | || || || Sbjct 5418 TTCGCTGGTAAACAATTGGAAGATGGTCGTACTCTTTCTGATTACAACATTCAAAAGGAA 5359 Query 206362 TCTACTCTTCAC 206373 || ||||| ||| Sbjct 5358 TCCACTCTCCAC 5347 Score = 89.7 bits (98), Expect = 1e-12 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGT-AAAGCA 206252 || || || || |||||| | ||||| || | || || | | ||| || ||| || Sbjct 5754 ACTGGTAAGACCATCACTCTCGAAGTTGAGGGCTCAGATAATATTGAAAATGTGAAAACA 5695 Query 206253 AAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAA 206312 ||| |||||||| |||||||| || || ||| |||||| | || ||||| || || Sbjct 5694 AAA-ATTCAAGACAAAGAAGGTATCCCACCTGACCAACAAAGATTGATTTTCGCTGGTAA 5636 Query 206313 GCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCA 206372 || ||||||||||| | || || ||||||||||| | || ||||| || ||||| || Sbjct 5635 ACAATTGGAAGATGGTCGTACATTATCCGATTACAACATTCAAAAAGAATCCACTCTCCA 5576 Query 206373 CCTTGTTTTGAGA 206385 | ||| | ||| Sbjct 5575 TTTAGTTCTTAGA 5563 >seq6 Length=461532 Score = 114 bits (126), Expect = 3e-20 Identities = 148/202 (73%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | || || ||||| |||||| | ||||| ||| |||| |||| ||||| Sbjct 390804 AAAACCTTAACTGGTAAAACCATCACTCTCGAAGTTGAAGGTTCAGACAACATCGAAAAC 390745 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| || ||||||||| |||||||| || || || ||| | |||||||| Sbjct 390744 GTCAAAGCCAA-GATTCAAGACAAAGAAGGTATCCCACCAGATCAACAACGTCTTATCTT 390686 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||||| || || || |||||||| | ||||| ||||||| ||| |||| || || || Sbjct 390685 TGCCGGTAAACAATTAGAAGATGGTCGTACTTTATCCGATTATAACATCCAAAAGGAATC 390626 Query 206364 TACTCTTCACCTTGTTTTGAGA 206385 || || ||| | ||||| ||| Sbjct 390625 AACCCTCCACTTAGTTTTAAGA 390604 >seq64 Length=175976 Score = 109 bits (120), Expect = 1e-18 Identities = 147/202 (73%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| |||||||| ||||| || ||| | ||||| ||| ||||||||| | ||| Sbjct 78439 AAAACTCTCACAGGTAAAACCATTACTCTCGAAGTAGAAGGTTCTGACAACATTGAAAAT 78380 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || |||||||| ||||||||| |||||||| || || ||| ||| | ||||| || Sbjct 78379 GTCAAAGCAAA-GATTCAAGATAAAGAAGGTATCCCACCAGACCAACAACGTCTTATTTT 78321 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 || || || || || || ||||| | ||| | | ||||| || | || ||||| || Sbjct 78320 TGCTGGCAAACAATTAGAGGATGGTCGTACTCTCTCAGATTATAATATTCAAAAAGAATC 78261 Query 206364 TACTCTTCACCTTGTTTTGAGA 206385 |||||||| | ||||| ||| Sbjct 78260 AACTCTTCATTTAGTTTTAAGA 78239 Score = 87.8 bits (96), Expect = 4e-12 Identities = 142/202 (70%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | || || ||||| || || | ||||| ||| ||||||||| | ||| Sbjct 77983 AAAACCTTGACCGGTAAAACCATTACCCTCGAAGTAGAAGGTTCTGACAACATTGAAAAT 77924 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || |||||||| ||||||||| ||||| || || || ||| ||| | ||||| || Sbjct 77923 GTCAAAGCAAA-GATTCAAGATAAAGAGGGTATCCCACCAGACCAACAACGTCTTATTTT 77865 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 || || || || || || ||||| | ||| | | ||||| || | || ||||| || Sbjct 77864 TGCTGGTAAACAATTAGAGGATGGTCGTACTCTCTCAGATTATAATATTCAAAAAGAATC 77805 Query 206364 TACTCTTCACCTTGTTTTGAGA 206385 |||||||| | ||||| ||| Sbjct 77804 AACTCTTCATTTAGTTTTAAGA 77783 >seq224 Length=37943 Score = 96.9 bits (106), Expect = 8e-15 Identities = 149/209 (71%), Gaps = 3/209 (1%) Strand=Plus/Minus Query 206179 TTTTG-CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGT 206237 ||||| |||||| | || || ||||| ||||| || ||||| ||| |||| || | | Sbjct 19025 TTTTGTCAAAACCTTAACTGGTAAAACCATCACATTAGAAGTTGAAGGTTCAGATAACAT 18966 Query 206238 CGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGAC 206296 ||| || ||||| || ||||||||| |||||||| || || ||| |||||| Sbjct 18965 TGAAAATGTTAAAGCCAA-GATTCAAGACAAAGAAGGTATCCCACCAGACCAACAAAGAT 18907 Query 206297 TTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGA 206356 | || || || || || || || |||||||| | ||| | | ||||| || | || | Sbjct 18906 TAATTTTTGCTGGTAAACAATTAGAAGATGGTCGTACTCTTTCTGATTATAATATTCAAA 18847 Query 206357 AAGAGTCTACTCTTCACCTTGTTTTGAGA 206385 |||| || ||||| ||| | || |||||| Sbjct 18846 AAGAATCAACTCTCCACTTAGTCTTGAGA 18818 Score = 96.9 bits (106), Expect = 8e-15 Identities = 142/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | || || ||||| ||||| || ||||| ||| |||| || | | ||| Sbjct 19930 AAAACCTTAACTGGTAAAACCATCACATTAGAAGTTGAAGGTTCAGATAACATTGAAAAT 19871 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||||||||| |||||||| || || ||| |||||| | || || Sbjct 19870 GTTAAGGCCAAGATTCAAGACAAAGAAGGTATCCCACCAGACCAACAAAGATTAATTTTT 19811 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || || || || |||||||| | ||| | | |||||||| | || ||||| || Sbjct 19810 GCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGATTACAATATTCAAAAAGAATCA 19751 Query 206365 ACTCTTCACCTTGTTTTGAGA 206385 ||||| ||| | || |||||| Sbjct 19750 ACTCTCCACTTAGTCTTGAGA 19730 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181805703347237