Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20firmibasis_20[genbank_20GCA_5F000277485.1_202012-07- 10] 997 sequences; 30,559,666 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq57 190 3e-43 >seq57 Length=183543 Score = 190 bits (210), Expect = 3e-43 Identities = 532/804 (66%), Gaps = 12/804 (1%) Strand=Plus/Plus Query 68404 GTACGTAGATAGTACATACCGGTTTTCAGACCTAGACTCCATCCGTAGAAATGCATACTT 68463 ||||| |||||||||||||| || || | ||| |||| |||||||||||| Sbjct 134247 GTACGAAGATAGTACATACCAGTCTTTAAACCCTTCTTCCAAGAGTAGAAATGCATTGAA 134306 Query 68464 GTTAGTTTGGAATAACTTGGATCGGCTATATGAATATTCATCGATTGACTTTGATCGATG 68523 || ||||| | | | |||| || || || || ||| | |||||||||||||||| Sbjct 134307 GTGAGTTTTGCAAAGGTTGGTTCAGCGATGAAAACATTGAAACTTTGACTTTGATCGATG 134366 Query 68524 AAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCTTTTGAGGAATTTCCCAAATAGTC 68583 ||||| || | ||| || ||||| | || | | | ||||| |||||||||| | || Sbjct 134367 AAAGCACCACGATCAGCAGCCATATCAATGAGAGTTCTTTGACGAATTTCCCATACGGTT 134426 Query 68584 TTAAAAATCTGTTTGATATCATCTGGAA-GGCTCGTAT--TTTGAATGGATCCACCATCG 68640 || | | | ||| | |||||||||| | | || ||| || || |||| | Sbjct 134427 TTGTAGAGTTCTTTCAATTCATCTGGAATACCACCAATCGATTGGATTGAACCACGTGCA 134486 Query 68641 GATATAATTATATTCTTGATCTCATCATTCCACAATTTTC-TCTCCGTTA-AAACTCTAA 68698 | || ||| |||||| ||||| |||| ||| | |||| | | | ||| || Sbjct 134487 GCGATGATTTGATTCTTCATCTCTGGTGTCCA-AATGCCCAACTCCATGAGATCCTCCAA 134545 Query 68699 GGAGATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTAC 68758 | || || || ||| ||||| |||| || || | |||| ||||||| || Sbjct 134546 -CAATTGTTTGTTGACAATTGTGAATTCACCAGCCAAGACACGACGACTGTAAATGTTTG 134604 Query 68759 TGGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCA 68818 || |||||||| | |||||||||| || || |||||| |||||| || ||||||| Sbjct 134605 AAGTGTATGGTTCAAAGCATTCATTATTACCAAGGATTTGACTAGTTGAAGCGGTTGGCA 134664 Query 68819 TAGGTGCCACCAATAAACTATTTCTAAGACCA--TGTGTT-ATGATTTTATCTTTTAGAT 68875 | ||||| | ||||| ||| | |||||| | | || | ||| ||||| |||| | Sbjct 134665 TTGGTGCGATCAATAGTGAATTACGTAGACCACCTTTATTGACGATCTTATCCTTTAATT 134724 Query 68876 GTTTCCAATCCCAAAGATCAGATGGTACAACATTCCAAAGATCGTATTGTAGAATTCCGT 68935 | ||||| |||| | | |||| ||||||||| | ||| |||| ||||| || | Sbjct 134725 CGTCCCAATTCCAACGTGAACTTGGTGTAACATTCCACATATCAAATTGGAGAATACCTT 134784 Query 68936 TACTTGCATATGATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAAC 68995 | ||| || || | | | ||||| | || || || | |||| |||| | Sbjct 134785 TGGATGCTGGGGAACCTTGGAAACTCTCATATGTGCCATCACGTACTGCTAATTCATGAG 134844 Query 68996 TTGCCTCTAATGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTG-TGCT 69054 || ||| || || ||||||| ||||| || | ||| | || | | ||| Sbjct 134845 AAGCTGTTAAAGCGGCGAAATAAATGGTTTCAGCGATTTCAACATTCA-ATTTAGATGCA 134903 Query 69055 TCTAGACTATCGAATGGATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCA 69114 | | |||||||||||| | | | |||| || |||| ||||| || |||| ||| Sbjct 134904 GCAACACTATCGAATGGCATACGCATTTGAATGAAAACATCGGCCAAACCTTGAATACCA 134963 Query 69115 ATACCGATAGGTCTATGTCTCTTATTTGAACTTTCAGCTTCTGGAATAGGATAATAATTA 69174 |||||||| || | |||||| ||| ||| ||| || ||| || ||||||| | ||| Sbjct 134964 ATACCGATTGGACGATGTCTGAGATTCGAAGTTTTTGCCTCTACAACAGGATAAAAGTTA 135023 Query 69175 ATATCTATAATTTTATTAAGATTT 69198 ||| ||||| || |||||| Sbjct 135024 CGATCGATAATAACGTTGAGATTT 135047 Score = 174 bits (192), Expect = 2e-38 Identities = 573/880 (65%), Gaps = 17/880 (2%) Strand=Plus/Plus Query 69268 AGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAATTTGCATATTGTATTATC 69327 ||||| | ||| || |||||||| || || | |||| || || ||||| || ||| Sbjct 135144 AGTGCAATAGAGGCAAGATTACATACAGCAATTTCATCAGGTGATGTGTATTGAATGATC 135203 Query 69328 TCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTA 69387 || ||||| |||||||| | |||| || || ||||| | ||||| || || Sbjct 135204 TCAGTACAAAGATTACTGCTACTGATGGTACCGAGATTCTTTTGATTGGATTTAGCATTG 135263 Query 69388 CAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGAT 69447 || || ||||| || | || || || ||||||||||||| || || || ||||| | Sbjct 135264 CAAGCATCCTTATACAATATGAATGGTGTACCAGTTTCAACTTGTGACTCCATAATTGCA 135323 Query 69448 TTCCAAACGACCCTAGCATTTATTACG-GTCTTGTAACG-CTTCTCTTT-TTCATATTGT 69504 ||||| | || || ||||| |||||| || || | || |||||||| | Sbjct 135324 AACCAAAGTTCTTGTGCCTTAATTACACGTCTTGGAAGATCTGGTGTTGCTTCATATTTT 135383 Query 69505 GTATATAGCCGTTCGAATTCATCTCCCCAAACA-----TCATCCAATCCAGGACATTCAT 69559 || || | ||| |||| || | ||| | || || |||| Sbjct 135384 AAGTAGAGG-GCACGATG----CTCCTCAGAGTGAGTCTCAGAGAGACCTGGTGCCTCAT 135438 Query 69560 TTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAA 69619 ||||||| | | || ||| || ||| | | ||| |||| |||||| | ||| | Sbjct 135439 TTGGACAAAAGAGTGCCCAATCACCATTTTGTTCAACACGTTCCATAAAGATATCACTGA 135498 Query 69620 TCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAA 69679 ||| ||||| ||||| ||||| | ||| | ||||| || || || ||||| || | Sbjct 135499 CCCAGAGAGCGTAGAAGAGGTCTCTTGCTCTCATCTCTTCTTTACCAGTGTTTTTCTTGA 135558 Query 69680 GATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCG 69739 |||| | |||||| | | ||| | ||||||||| |||| || | || | | | || Sbjct 135559 GATCAATAAACTCAAATACATCGGCATGCCATGGCTCTAAGTAGACGGCAAAGGCACCTT 135618 Query 69740 GTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCG 69799 || ||| || || || || | || | ||||| | ||| | || | ||||| | Sbjct 135619 TTCTCTTACCACCACCTTGGTCAACATAACGTGCAGTATCATTGAAAACACGAAGCATTG 135678 Query 69800 GAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATAT 69859 | | | ||| || ||||||| || ||| |||||||||| || ||||| | Sbjct 135679 GTACCAAACCGTTGCTAGTACCATTGGTACCACGAATATAACTTTGAGCGGCACGAATCT 135738 Query 69860 TACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATG 69919 | | | | ||| || || || || |||| ||||||| ||||| |||| || | Sbjct 135739 TGTGGACGGCAATACCAATACCACCAGCACTTTTTGAGATTAATGCACATTGTTTTAAGG 135798 Query 69920 TGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTT 69979 | || || ||||| ||||| || || |||| | || | ||||| || ||||| | Sbjct 135799 TATCGTAGATACCATCTATTGAGTCCTCCTTCATTTGAACCAAGAAACAACTTGACATCT 135858 Query 69980 GATGATG-TATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCA 70038 | || || | || || ||||| || || || |||| || || |||||| |||| | | Sbjct 135859 G-TGGTGATGGTGTACCTGCATTGAACAAGGTTGGAGTAGCATGGGTGAACAATTTCTGA 135917 Query 70039 GAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATC-CCACTGATGAATTCCTATCGC 70097 || || | ||||| || | ||| || || || || ||| ||| || |||| | Sbjct 135918 GAGAGATGTTTGTAGGTGTTAATGGCACTATCGATGTCTTCAC-CATGGATACCTACAGA 135976 Query 70098 GACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTA 70137 |||||||||||||||||| || || ||||| || ||||| Sbjct 135977 GACACGCATCAACATATGTTGTGGACGTTCCACAATTTTA 136016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686900239399080