Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20firmibasis_20[genbank_20GCA_5F000277485.1_202012-07- 10] 997 sequences; 30,559,666 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq57 233 2e-56 seq24 91.5 2e-13 seq35 87.8 2e-12 >seq57 Length=183543 Score = 233 bits (258), Expect = 2e-56 Identities = 1165/1831 (64%), Gaps = 56/1831 (3%) Strand=Plus/Plus Query 110363 CGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCATGCGTACATATGCATAGAAGAG 110422 || ||||||||||| || ||||| | || | ||||| | ||| | |||||| |||| | Sbjct 134250 CGAAGATAGTACATACCAGTCTTTAAACCCTTCTTCCAAGAGTAGAAATGCATTGAAGTG 134309 Query 110423 AGCTTGGACATCGTTGGACTTTCCATGAAGAGGTTCATACTTTGACTTTGGTCAATGAAG 110482 || || | | ||||| | ||||| | || | |||||||||||| || ||||| Sbjct 134310 AGTTTTGCAAAGGTTGGTTCAGCGATGAAAACATTGAAACTTTGACTTTGATCGATGAAA 134369 Query 110483 CGCCCCCGTTGTGCCGCCATATCAATGACA-TCCTTCATCTTAATTTCCCAAACTGTGCG 110541 || || | || ||||||||||||| | | ||| | ||||||||| || || Sbjct 134370 GCACCACGATCAGCAGCCATATCAATGAGAGTTCTTTGACG-AATTTCCCATACGGTTTT 134428 Query 110542 ATAGAGATTCTTGATATCATCTGGGATATCTGAGATATTCTGGATGGAACCCCCCGCCTT 110601 ||||| | || | |||||||| ||| | || ||||| ||||| | || Sbjct 134429 GTAGAGTTCTTTCAATTCATCTGGAATACCACCAATCGATTGGATTGAACCACGTGCAGC 134488 Query 110602 CACCATGAGATCCTTCATATCCTTGGACCAGAGACCAATCTTCTTGAGGTCATTGACGAG 110661 | || ||| |||||| || | ||| | || | || | |||| || | | | Sbjct 134489 GATGATTTGATTCTTCATCTCTGGTGTCCAAATGCCCAACTCCATGAGATCCTCCAACAA 134548 Query 110662 GTGCTTGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGT 110721 || ||||||||||| || ||||| || | | | | ||| ||||||| || Sbjct 134549 TTGTTTGTTGACAATTGTGAATTCACCAGCCAAGACACGACGACTGTAAATGTTTGAAGT 134608 Query 110722 GTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGG 110781 ||||||||||||||||||||||||||| | |||||| || || || ||||||||||| Sbjct 134609 GTATGGTTCAAAGCATTCATTATTACCAAGGATTTGACTAGTTGAAGCGGTTGGCATTGG 134668 Query 110782 TGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATG--CGT-TCCTTGAGAACATC 110838 ||| ||||| || ||||| ||||| | |||| | | | ||||| | | || Sbjct 134669 TGCGATCAATAGTGAATTACGTAGACCACCTTTATTGACGATCTTATCCTTTAATTCGTC 134728 Query 110839 CC-AGTCGTAGTTGAGCTTGGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCTTGGG 110897 || | || | ||| |||||| | || || |||||| ||||| || || | |||| || Sbjct 134729 CCAATTCCAACGTGAACTTGGTGTAACATT-CCACATATCAAATTGGAGAATACCTTTGG 134787 Query 110898 ACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCA----CAG 110953 | || || ||||| | || | ||||| | || | | | || |||||| || Sbjct 134788 ATGCTGGGGAACCTTGGAAACTCTCATATGTGCCATCACGTACTGCTAATTCATGAGAAG 134847 Query 110954 CTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCT 111013 || | || | ||| ||| ||||||||| ||| | |||||| | || Sbjct 134848 CT--GTTAAAGCG--GCGAAATAAATGGTTTCAGCGATTTCAACATTCAATTTAGATGCA 134903 Query 111014 TCATCTGAATCAAAT-GCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACC 111072 || | ||| ||| || || || ||| || ||||| || | |||||||| ||| Sbjct 134904 GCAACACTATCGAATGGCATA-CGCATTTGAATGAAAACATCGGCCAAACCTTGAATACC 134962 Query 111073 CAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCT-CAACGGGATAAAAAT 111131 | ||| || || | |||| | ||| || || || ||| |||| |||||||| | Sbjct 134963 AATACCGATTGGACGATGTCTGAGATTCGAAGTTTTTGC-CTCTACAACAGGATAAAAGT 135021 Query 111132 TTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTT 111191 | | || || | ||| |||||| || | | ||| || || ||| || || Sbjct 135022 TACGATCGATAATAACGTTGAGATTTACAGTGATCAACTTGGTTATCTCAAAGAGGAATT 135081 Query 111192 CATAATCAAA------------------AGTGCGAGTCTCTTCATTGAC--AT--ACTTT 111229 || ||| || ||| ||| || | ||||| || | ||| Sbjct 135082 GATGATCGAATTCCTTCTCTTTTGGATCTGTG-GAGCCTGGTTTTTGACGAATGAATTTT 135140 Query 111230 GGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAA 111289 ||||| || || || || | ||| || ||||| | ||||| |||||| | | Sbjct 135141 GGAAGTGCAATAGAGGCAAGATTACATACAGCAATTTCATCAGGTGATGTGTATTGAATG 135200 Query 111290 ATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTG 111349 || || ||||| | || || | || || || | ||||||||| || || Sbjct 135201 ATCTCAGTACAAAGATTACTGCTACTGATGGTACCGAGATTCTTTTGATTGGATTTAGCA 135260 Query 111350 TTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATA 111409 ||||| |||||||| || | ||| | || || || || || ||||| | | ||| Sbjct 135261 TTGCAAGCATCCTTATACAATATGAATGGTGTACCAGTTTCAACTTGTGACTCCATAATT 135320 Query 111410 GCCTTCCAAACATC-GGCGGCT--GGTACAATGGCGTTGGCCCGTC--CCTCCGCCTCGT 111464 || ||||| || | | || |||| | |||| || || || | Sbjct 135321 GCAAACCAAAGTTCTTGTGCCTTAATTACA--CGTCTTGGAAGATCTGGTGTTGCTTCAT 135378 Query 111465 ACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGT 111524 | ||| ||||||||| | ||||||| | || |||||||||||||||| | Sbjct 135379 ATTTTAAGTAGAGGGCACGATGCTCCTCAGAGTGAGTCTCAGAGAGACCTGGTGCCTCAT 135438 Query 111525 CTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAA 111584 |||||| || || | ||| | |||| || ||||| || | ||| || | || | Sbjct 135439 TTGGACAAAAGAGTGCCCAATCACCATTTTGTTCAACACGTTCCATAAAGATATCACTGA 135498 Query 111585 TCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACC-TTGGTTGAGTCGT 111643 ||| || | | ||||| ||||| | |||||| | ||| || || | | Sbjct 135499 CCCAGAGAGCGTAGAAGAGGTCTCTTGCTCTCATCTCTTCTTTACCAGTGTTTTTCTTG- 135557 Query 111644 AACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCC 111703 | |||| ||||| | | ||| || ||||||||||| | ||||| || | | || Sbjct 135558 AGATCAATAAACTCAAATACATCGGCATGCCATGGCTCTAAGTAGACGGCAAAGGCACCT 135617 Query 111704 TTTC---GACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATT 111760 |||| || ||| |||| | ||||| || || || | || || || ||||||||| Sbjct 135618 TTTCTCTTACCACCACCTTGGTCAACATAACGTGCAGTATCATTGAAAACACGAAGCATT 135677 Query 111761 GGAATAATACCATCTGATTG-ACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCAC 111819 || | | ||| | || | | |||||| || || |||||| | || | ||| | | Sbjct 135678 GGTACCAAACCGT-TGCTAGTACCATTGGTACCACGAATATAACTTTGAGCGGCACGAAT 135736 Query 111820 ATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAG 111879 | |||| | || |||||||| ||||| | ||||||||| ||||| | | | Sbjct 135737 CTTGTGGACGGCAATACCAATACCACCAGCACTTTTTGAGATTAATGCACATTGTTTTAA 135796 Query 111880 AGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACAT 111939 || | |||||||| | |||||||||||||| | | | ||| ||||| ||||| Sbjct 135797 GGTATCGTAGATACCATCTATTGAGTCCTCCTTCATTTGAACCAAGAAACAACTTGACAT 135856 Query 111940 CTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG 111999 ||| ||| ||||||||| |||||||| | |||||| || || || |||||| || Sbjct 135857 CTGTGGTGATGGTGTACCTGCATTGAACAAGGTTGGAGTAGCATGGGTGAACAATTTCTG 135916 Query 112000 GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGC 112059 || | | | ||| || | | | || ||| |||||||| || ||||| || | | Sbjct 135917 AGAGAGATGTTTGTAGGTGTTAATGGCACTATCGATGTCTTCACCATGGATACCTACAGA 135976 Query 112060 GACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATA 112119 ||| ||||| ||||| | ||||| ||||| | | ||| | | || |||||||| Sbjct 135977 GACACGCATCAACATATGTTGTGGACGTTCCACAATTTTACCACCAATACGATGAAGATA 136036 Query 112120 GCTCTTCTCAAGGGTTTTGAGACCAAAGTAA 112150 ||| | ||||||| |||||| || Sbjct 136037 TGAACGCTCTAATGTTTTGAAGCCAAAGAAA 136067 >seq24 Length=311718 Score = 91.5 bits (100), Expect = 2e-13 Identities = 270/413 (65%), Gaps = 15/413 (4%) Strand=Plus/Plus Query 11540 AAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTG---CT 11596 || |||||||| || | | |||||| | ||| | || | ||||||||| | | Sbjct 86576 AAACCATCCATTTCAACCAAAAGTTGATTTAATGTATTCTCACGCTCATCATTCGAACCA 86635 Query 11597 GGCATACCACCAGCACTGCGTTGCT-TGCCCACCGCATCAATCTCATCAATGAAGACAAT 11655 | | |||||| || | ||||| | || | |||||||||||||| ||||| ||||| Sbjct 86636 GAGAAACCACCTTTACCTC-TTGCTCTACCGATTGCATCAATCTCATCTATGAAAACAAT 86694 Query 11656 ACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACC 11715 || ||| || | | || |||||| | || | ||| | | | ||| ||||| Sbjct 86695 GCAAGGTGCGTTCTTTCTTGCTTGTTCAAATAATTCTCTAACACGTGATGGACCAACACC 86754 Query 11716 AACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGG-----ATGAATGGGACATTTGAT 11770 |||||||||||| || || | || | |||||| | |||||| ||||||||| Sbjct 86755 AACAAACATCTCTACGAAATCTG-----AACCACTGGTTGAAAAGAATGGTACATTTGAT 86809 Query 11771 TCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGG 11830 ||||| ||| | ||| ||| | | || || || |||||||| || | | | Sbjct 86810 TCACCTGCGGTTGCTTTGGCAATCAATGTTTTACCGGTACCTGGTGGTCCAACCAAGATT 86869 Query 11831 GCGCCTCGGGGGATCTTGGCACCACTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCC 11890 || |||| || ||||| || ||| | || | || ||| || | || | ||| | Sbjct 86870 GCACCTCTTGGAATCTTTGCTCCAATGTCATGAAATTTCTTTGGATTTTTTAAAAAGTTT 86929 Query 11891 ACAATCTCTTCAAGTTCATCTTTGGCCGCGTCAATCCCCTCAACATCACTGAA 11943 |||| ||||||| || | || ||| | ||| || |||||||||| || Sbjct 86930 ACAAATTCTTCAATCTCTACCTTTGCCTCACCAAGACCTGCAACATCACTAAA 86982 >seq35 Length=230046 Score = 87.8 bits (96), Expect = 2e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 11624 CCCACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCA 11683 ||||| | ||||||||||| ||||| |||||||||||| ||| | | |||| |||| Sbjct 19110 CCCACAGAGTCAATCTCATCGATGAATACAATACATGGTGAATTCTTTCTGGCGGCTTCA 19169 Query 11684 AAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAA 11721 || ||||| || || | ||| || |||||||||||||| Sbjct 19170 AATAGATCACGTACACGTTTTGCTCCCACACCAACAAA 19207 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628024173151200