Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20firmibasis_20[genbank_20GCA_5F000277485.1_202012-07- 10] 997 sequences; 30,559,666 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq175 105 5e-18 seq62 105 5e-18 seq224 95.1 9e-15 seq160 95.1 9e-15 >seq175 Length=69793 Score = 105 bits (116), Expect = 5e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 27786 TAAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAG 27845 || ||||||||| ||||| |||||||| ||||| ||| ||||| | || || ||| | Sbjct 6238 TATAATGCAAATCTTTGTTAAAACTCTCACTGGTAAAACCATTACTTTAGAAGTAGAAGG 6179 Query 27846 CACCGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGA 27905 | ||| || | || || ||| ||||| ||||| |||||| |||| || Sbjct 6178 TTCTGACAATATTGAAAATGTAAAAACCAAAATTCAAGACAAGGAAGGTATTCCACCAGA 6119 Query 27906 GCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTA 27965 || ||||| | ||||| || || ||||||||||| || | || | | || ||||| Sbjct 6118 CCAACAACGTCTTATTTTCGCTGGTAAACAATTGGAAGATGGTCGTACTCTTTCTGATTA 6059 Query 27966 CAACATCCAAAAAGAGAGCACTTTGCATTTGGT 27998 |||||| ||||| ||| |||| | |||||||| Sbjct 6058 CAACATTCAAAAGGAGTCCACTCTCCATTTGGT 6026 Score = 86.0 bits (94), Expect = 4e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||| || || | ||||| || || || | || || || || | Sbjct 5778 ATGCAAATCTTTGTTAAGACATTAACTGGTAAGACCATCACTCTCGAAGTTGAGGGCTCA 5719 Query 27850 GACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAG 27909 || || | || || ||| |||||| |||||||||||| | || || || Sbjct 5718 GATAATATTGAAAATGTGAAAACAAAAATTCAAGACAAAGAAGGTATCCCACCTGACCAA 5659 Query 27910 CAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAAC 27969 ||| | || ||||| || || ||||||||||| || | || | || |||||||||||| Sbjct 5658 CAAAGATTGATTTTCGCTGGTAAACAATTGGAAGATGGTCGTACATTATCCGATTACAAC 5599 Query 27970 ATCCAAAAAGAGAGCACTTTGCATTTGGTT 27999 || |||||||| |||| | ||||| ||| Sbjct 5598 ATTCAAAAAGAATCCACTCTCCATTTAGTT 5569 >seq62 Length=176758 Score = 105 bits (116), Expect = 5e-18 Identities = 151/211 (72%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||||||||| ||||| || ||||| ||| ||||| | || || ||| | | Sbjct 77495 ATGCAAATTTTTGTTAAAACCCTCACTGGTAAAACCATTACTCTCGAGGTTGAAGGTAGT 77554 Query 27850 GACGATGT--ACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || | | ||| |||||| ||||| |||||||||||| |||| || | Sbjct 77555 GACAATATTGAGAAT--GTCAAAGCCAAAATCCAAGACAAAGAAGGTATTCCACCAGATC 77612 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | ||||| | ||||| ||||| |||||||| || |||| || | | || || |||| Sbjct 77613 AACAACGTCTTATTTTCGCCGGTAAACAATTAGAAGACGGTCGTACTCTCTCTGACTACA 77672 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGT 27998 ||||||||||||| |||| | || || || Sbjct 77673 ACATCCAAAAAGAATCCACTCTCCACTTAGT 77703 Score = 102 bits (112), Expect = 6e-17 Identities = 151/212 (71%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||||||||| ||||| || ||||| || || ||| | || || ||| | || Sbjct 76811 ATGCAAATTTTTGTTAAAACCCTCACTGGTAAGACCATCACATTAGAAGTTGAAGGTTCC 76870 Query 27850 GACGATGT--ACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | | | ||| |||||| ||||| |||||||||||| |||| || | Sbjct 76871 GATAACATCGAGAAT--GTCAAAGCCAAAATCCAAGACAAAGAAGGTATTCCACCAGATC 76928 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | ||||| | ||||| ||||| |||||||| || |||| || | | || ||||||| Sbjct 76929 AACAACGTCTTATTTTCGCCGGTAAACAATTAGAAGACGGTCGTACTCTCTCTGATTACA 76988 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTT 27999 |||| ||||||||| ||| | ||||| ||| Sbjct 76989 ACATTCAAAAAGAGTCAACTCTCCATTTAGTT 77020 Score = 102 bits (112), Expect = 6e-17 Identities = 151/212 (71%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||||||||| ||||| || ||||| || || ||| | || || ||| | || Sbjct 77267 ATGCAAATTTTTGTTAAAACCCTCACTGGTAAGACCATCACATTAGAAGTTGAAGGTTCC 77326 Query 27850 GACGATGT--ACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | | | ||| |||||| ||||| |||||||||||| |||| || | Sbjct 77327 GATAACATCGAGAAT--GTCAAAGCCAAAATCCAAGACAAAGAAGGTATTCCACCAGATC 77384 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | ||| | ||||| |||||||| |||||||| || |||| || | | || ||||| | Sbjct 77385 AACAAAGATTAATCTTTGCCGGTAAACAATTAGAAGACGGTCGTACTCTCTCTGATTATA 77444 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTT 27999 |||| ||||||||| ||| | ||||| ||| Sbjct 77445 ACATTCAAAAAGAGTCAACTCTCCATTTAGTT 77476 Score = 100 bits (110), Expect = 2e-16 Identities = 139/193 (72%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||||||||| ||||| || ||||| ||| ||||| | || |||||| | | Sbjct 77039 ATGCAAATTTTTGTTAAAACCCTCACTGGTAAAACCATTACTCTCGAAGTCGAAGGTAGT 77098 Query 27850 GACGATGT--ACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| | | | ||| || ||| ||||| |||||||||||| |||| || | Sbjct 77099 GACAACATTGAGAAT--GTTAAAGCCAAAATCCAAGACAAAGAAGGTATTCCACCAGATC 77156 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | ||||| | ||||| ||||| |||||||| || |||| || | | || || |||| Sbjct 77157 AACAACGTCTTATTTTCGCCGGTAAACAATTAGAAGACGGTCGTACTCTCTCTGACTACA 77216 Query 27968 ACATCCAAAAAGA 27980 ||||||||||||| Sbjct 77217 ACATCCAAAAAGA 77229 Score = 84.2 bits (92), Expect = 2e-11 Identities = 147/212 (69%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||||||||| |||||||| ||||| ||| || ||| | || || ||| | | Sbjct 76583 ATGCAAATTTTTGTTAAAACTCTCACTGGTAAAACAATCACATTGGAAGTTGAAGGTTCT 76642 Query 27850 GACGATGT--ACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | | | ||| || ||| ||||| ||||||||||| |||| || | Sbjct 76643 GATAACATCGAGAAT--GTTAAAGCCAAAATCCAAGACAAAGAAGGCATTCCACCAGATC 76700 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | ||||| | ||||| ||||| |||||||| || || | || | | || || |||| Sbjct 76701 AACAACGTCTTATTTTCGCCGGTAAACAATTAGAAGATGGTCGTACTCTTTCTGACTACA 76760 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTT 27999 |||| |||||||| ||| | ||||| ||| Sbjct 76761 ACATTCAAAAAGAATCCACCCTCCATTTAGTT 76792 >seq224 Length=37943 Score = 95.1 bits (104), Expect = 9e-15 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 ||||||||||||||| ||||| | ||||| ||| |||||| | || || ||| | | Sbjct 20174 AATGCAAATTTTTGTTAAAACATTAACTGGTAAAACTATTACCTTAGAAGTTGAAGGTTC 20115 Query 27849 CGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCA 27908 || | | || || ||| ||||| |||||||||||| |||| || || Sbjct 20114 TGATAACATTGAAAATGTTAAAGCCAAAATCCAAGACAAAGAAGGTATTCCACCAGATCA 20055 Query 27909 GCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAA 27968 ||||| | ||||||||||| |||||||| || |||| || | | || |||||||| Sbjct 20054 ACAACGTCTTATTTTTGCCGGTAAACAATTAGAAGACGGTCGTACTCTTTCTGATTACAA 19995 Query 27969 CATCCAAAAAGA 27980 || |||||||| Sbjct 19994 TATTCAAAAAGA 19983 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||| ||||| | ||||| ||| || ||| | || || ||| | | | Sbjct 19261 ATGCAAATCTTTGTCAAAACCTTAACTGGTAAAACAATCACATTAGAAGTTGAAGGTAGC 19202 Query 27850 GACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAG 27909 || | | || |||||| |||||| |||||||||||| | || || || Sbjct 19201 GATAACATTGAAAATGTCAAAGCAAAAATTCAAGACAAAGAAGGTATCCCACCAGACCAA 19142 Query 27910 CAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAAC 27969 ||| | |||||||| || || |||||||| || |||| || | | || |||||||| Sbjct 19141 CAAAGATTAATTTTCGCTGGTAAACAATTAGAAGACGGTCGTACTCTTTCTGATTACAAT 19082 Query 27970 ATCCAAAAAGA 27980 || |||||||| Sbjct 19081 ATTCAAAAAGA 19071 >seq160 Length=80418 Score = 95.1 bits (104), Expect = 9e-15 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 || ||||||||||| || ||||| || ||||| ||| ||||| | || || ||| || Sbjct 3301 AATATGCAAATTTTCGTTAAAACACTAACTGGTAAAACCATTACTCTCGAAGTTGAAGGC 3360 Query 27847 ACCGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 | || | | || || ||| |||||| || ||||||||| |||| || Sbjct 3361 TCTGATAACATTGAAAATGTTAAAGCAAAAATTCAAGATAAAGAAGGTATTCCACCAGAT 3420 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 || ||| | ||||||||||| || |||||||| || || | || | || || || || Sbjct 3421 CAACAAAGATTAATTTTTGCTGGTAAACAATTAGAAGATGGTCGTACTTTATCAGACTAT 3480 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTT 28001 ||||| |||||||| ||| | ||||| ||||| Sbjct 3481 AACATTCAAAAAGAATCAACTCTTCATTTAGTTTT 3515 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355858075938219