Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20firmibasis_20[genbank_20GCA_5F000277485.1_202012-07- 10] 997 sequences; 30,559,666 total letters Query= NC_030240.1 Length=128058 Score E Sequences producing significant alignments: (Bits) Value seq224 136 3e-27 seq64 111 1e-19 seq175 105 5e-18 seq2 82.4 6e-11 >seq224 Length=37943 Score = 136 bits (150), Expect = 3e-27 Identities = 194/267 (73%), Gaps = 7/267 (3%) Strand=Plus/Plus Query 101012 CCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCC 101071 || |||| |||||||| || | ||| | ||||||||||||||||||||||||||| | Sbjct 19947 CCACCTCTTAATCTTAAGACTAAGTGGAGAGTTGATTCTTTTTGAATATTGTAATCAGAA 20006 Query 101072 ATAGTTTTGGAATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGC 101131 | ||| ||||| |||||||| || ||| | ||||| | |||||| ||| || Sbjct 20007 AGAGTACGACCGTCTTCTAATTGTTTACCGGCAAAAATAAGACGTTGTTGATCTGGTGGA 20066 Query 101132 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTT--G 101189 | ||||||||||| ||||| ||| |||| || || | | | || || Sbjct 20067 ATACCTTCTTTGTCTTGGATTTTGGCTTTAACAT-TTTCAATGT-TATCAGAACCTTCAA 20124 Query 101190 TTTCGACGGTAATAGTTTTGCCCGTCAATGTTTTAATAAAAATTTGCATTATTACAATAT 101249 ||| | |||||||||||| || || |||||||||| ||||||||||||| | ||| | Sbjct 20125 CTTCTAAGGTAATAGTTTTACCAGTTAATGTTTTAACAAAAATTTGCATTGCT--AAT-T 20181 Query 101250 ATTTTTTACTTTGTATATATATGTAAT 101276 |||||| | ||||||||||| |||| Sbjct 20182 TTTTTTTTTTATGTATATATATTTAAT 20208 Score = 102 bits (112), Expect = 7e-17 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 101012 CCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCC 101071 || |||| |||||||| || | ||| | ||||||||||||||||||||||||||| | Sbjct 19491 CCACCTCTTAATCTTAAGACTAAGTGGAGAGTTGATTCTTTTTGAATATTGTAATCAGAA 19550 Query 101072 ATAGTTTTGGAATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGC 101131 | ||| |||||| |||||||| || || | ||||| | |||||| ||| || Sbjct 19551 AGAGTACGACCATCTTCTAATTGTTTACCGGCGAAAATAAGACGTTGTTGATCTGGTGGG 19610 Query 101132 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTT--G 101189 | ||||||||||| ||||| ||| |||| | | | || | || || Sbjct 19611 ATACCTTCTTTGTCTTGGATTTTGGCTTTAACATTTTCAATGTTATCACT--ACCTTCAA 19668 Query 101190 TTTCGACGGTAATAGTTTTGCCCGTCAATGTTTTAATAAAAATTTGCAT 101238 || | ||||| || || || ||||| ||||||| |||||||||||| Sbjct 19669 CCTCAAGAGTAATGGTCTTACCGGTCAAAGTTTTAACAAAAATTTGCAT 19717 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 101012 CCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCC 101071 || |||| ||||| || || | ||| | ||||||||||||||||||||| ||||| | Sbjct 18807 CCACCTCTTAATCTCAAGACTAAGTGGAGAGTTGATTCTTTTTGAATATTATAATCAGAA 18866 Query 101072 ATAGTTTTGGAATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGC 101131 | ||| |||||| |||||||| || ||| | || | |||||||||||| || Sbjct 18867 AGAGTACGACCATCTTCTAATTGTTTACCAGCAAAAATTAATCTTTGTTGGTCTGGTGGG 18926 Query 101132 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTT--G 101189 | ||||||||||| ||| || ||| |||| || || | | || || || Sbjct 18927 ATACCTTCTTTGTCTTGAATCTTGGCTTTAACAT-TTTCAATGT-TATCTGAACCTTCAA 18984 Query 101190 TTTCGACGGTAATAGTTTTGCCCGTCAATGTTTTAATAAAAATTTGCAT 101238 ||| | || || ||||| || || || ||||| | |||||||||||| Sbjct 18985 CTTCTAATGTGATGGTTTTACCAGTTAAGGTTTTGACAAAAATTTGCAT 19033 Score = 93.3 bits (102), Expect = 3e-14 Identities = 113/154 (73%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 101012 CCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCC 101071 || |||| ||||| || || | ||| | ||||||||||||||||||||||||||| | Sbjct 19035 CCACCTCTTAATCTCAAGACTAAGTGGAGAGTTGATTCTTTTTGAATATTGTAATCAGAA 19094 Query 101072 ATAGTTTTGGAATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGC 101131 | ||| ||||| |||||||| || || | || | |||||||||||| || Sbjct 19095 AGAGTACGACCGTCTTCTAATTGTTTACCAGCGAAAATTAATCTTTGTTGGTCTGGTGGG 19154 Query 101132 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACAT 101165 | ||||||||||| ||||||| ||| |||| Sbjct 19155 ATACCTTCTTTGTCTTGAATTTTTGCTTTGACAT 19188 Score = 93.3 bits (102), Expect = 3e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 101012 CCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCC 101071 || |||| ||||| || || | ||| | ||||||||||||||||||||||||||| | Sbjct 19719 CCACCTCTTAATCTCAAGACTAAGTGGAGAGTTGATTCTTTTTGAATATTGTAATCAGAG 19778 Query 101072 ATAGTTTTGGAATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGC 101131 | ||| |||||| |||||||| || ||| | || | |||||||||||| || Sbjct 19779 AGAGTACGACCATCTTCTAATTGTTTACCAGCAAAAATTAATCTTTGTTGGTCTGGTGGG 19838 Query 101132 ACGCCTTCTTTGTC 101145 | ||||||||||| Sbjct 19839 ATACCTTCTTTGTC 19852 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 101012 CCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCC 101071 || |||| |||||||| || | ||| | ||||||||||||||||||||||||||| | Sbjct 19263 CCACCTCTTAATCTTAAGACTAAGTGGAGAGTTGATTCTTTTTGAATATTGTAATCAGAA 19322 Query 101072 ATAGTTTTGGAATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGC 101131 | ||| ||||| |||||||| || || | ||||| | |||||| ||| || Sbjct 19323 AGAGTACGACCGTCTTCTAATTGTTTACCGGCGAAAATAAGACGTTGTTGATCTGGTGGG 19382 Query 101132 ACGCCTTCTTTGTC 101145 | ||||||||||| Sbjct 19383 ATACCTTCTTTGTC 19396 >seq64 Length=175976 Score = 111 bits (122), Expect = 1e-19 Identities = 164/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 101012 CCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCC 101071 || |||| |||||||| || | || | ||||||||||||||||||||| ||||| | Sbjct 77772 CCACCTCTTAATCTTAAAACTAAATGAAGAGTTGATTCTTTTTGAATATTATAATCTGAG 77831 Query 101072 ATAGTTTTGGAATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGC 101131 | ||| ||| || |||||||| || ||| | ||||| | |||||||||| || Sbjct 77832 AGAGTACGACCATCCTCTAATTGTTTACCAGCAAAAATAAGACGTTGTTGGTCTGGTGGG 77891 Query 101132 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTTGT- 101190 | || ||||| || ||| ||| ||| |||| || || | | | || || | Sbjct 77892 ATACCCTCTTTATCTTGAATCTTTGCTTTGACAT-TTTCAATGT-TGTCAGAACCTTCTA 77949 Query 101191 -TTCGACGGTAATAGTTTTGCCCGTCAATGTTTTAATAAAAATTTGCAT 101238 ||||| |||||| ||||| || ||||| ||||| | |||||||||||| Sbjct 77950 CTTCGAGGGTAATGGTTTTACCGGTCAAGGTTTTTACAAAAATTTGCAT 77998 Score = 107 bits (118), Expect = 2e-18 Identities = 165/232 (71%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 101012 CCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCC 101071 || |||| |||||||| || | || | ||||||||||||||||||||| ||||| | Sbjct 78228 CCACCTCTTAATCTTAAAACTAAATGAAGAGTTGATTCTTTTTGAATATTATAATCTGAG 78287 Query 101072 ATAGTTTTGGAATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGC 101131 | ||| ||| || ||||||||||| ||| | ||||| | |||||||||| || Sbjct 78288 AGAGTACGACCATCCTCTAATTGTTTGCCAGCAAAAATAAGACGTTGTTGGTCTGGTGGG 78347 Query 101132 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTTGT- 101190 | |||||||| || ||| ||| ||| |||| || || | | | || || | Sbjct 78348 ATACCTTCTTTATCTTGAATCTTTGCTTTGACAT-TTTCAATGT-TGTCAGAACCTTCTA 78405 Query 101191 -TTCGACGGTAATAGTTTTGCCCGTCAATGTTTTAATAAAAATTTGCATTAT 101241 ||||| ||||| ||||| || || | ||||||| ||||||||||| || Sbjct 78406 CTTCGAGAGTAATGGTTTTACCTGTGAGAGTTTTAACGAAAATTTGCATAAT 78457 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 101012 CCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCC 101071 || |||| |||||||| || | || | ||||||||||||||||||||| ||||| | Sbjct 78000 CCACCTCTTAATCTTAAAACTAAATGAAGAGTTGATTCTTTTTGAATATTATAATCTGAG 78059 Query 101072 ATAGTTTTGGAATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGC 101131 | ||| ||| || ||||||||||| || | || | |||||||| ||| || Sbjct 78060 AGAGTACGACCATCCTCTAATTGTTTGCCAGCGAAAATTAATCTTTGTTGATCTGGTGGG 78119 Query 101132 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTTGT- 101190 | || ||||| || ||||| ||| |||| || || | | | || || | Sbjct 78120 ATACCCTCTTTATCTTGGATTTTGGCTTTTACAT-TTTCAATGT-TATCAGAACCTTCTA 78177 Query 101191 -TTCGACGGTAATAGTTTTGCCCGTCAATGTTTTAATAAAAATTTGCAT 101238 ||||| || || ||||| || ||||| ||||| | |||||||||||| Sbjct 78178 CTTCGAGTGTGATTGTTTTACCGGTCAAGGTTTTTACAAAAATTTGCAT 78226 >seq175 Length=69793 Score = 105 bits (116), Expect = 5e-18 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 101012 CCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCC 101071 || |||| |||||| | || | || | ||| |||||||||||||| |||||||||| Sbjct 5552 CCACCTCTCAATCTAAGAACTAAATGGAGAGTGGATTCTTTTTGAATGTTGTAATCGG-- 5609 Query 101072 ATAGTTTTGGA--ATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGG 101129 ||| | | || ||||||||||||||| || || | || | ||||||||||| | Sbjct 5610 ATAATGTACGACCATCTTCCAATTGTTTACCAGCGAAAATCAATCTTTGTTGGTCAGGTG 5669 Query 101130 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTTG 101189 | | ||||||||||| ||||||| |||||||| | | | |||| | | Sbjct 5670 GGATACCTTCTTTGTCTTGAATTTTTGTTTTCACATTTTCAATATTATCTGAGCCCTCAA 5729 Query 101190 TTTCGACGGTAATAGTTTTGCCCGTCAATGTTTTAATAAAAATTTGCAT 101238 ||||| || || || || || || ||||| |||| ||| |||||||| Sbjct 5730 CTTCGAGAGTGATGGTCTTACCAGTTAATGTCTTAACAAAGATTTGCAT 5778 Score = 89.7 bits (98), Expect = 4e-13 Identities = 160/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 101012 CCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCC 101071 || |||| ||||| | |||| || | ||| || || |||||||| |||||||| | Sbjct 6008 CCACCTCTTAATCTGAGTACCAAATGGAGAGTGGACTCCTTTTGAATGTTGTAATCAGAA 6067 Query 101072 ATAGTTTTGGAATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGC 101131 | ||| ||||||||||||||| || || | ||||| | |||||||||| || Sbjct 6068 AGAGTACGACCATCTTCCAATTGTTTACCAGCGAAAATAAGACGTTGTTGGTCTGGTGGA 6127 Query 101132 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTTGT- 101190 | ||||| ||||| |||||| ||| |||| | | | || | || || | Sbjct 6128 ATACCTTCCTTGTCTTGAATTTTGGTTTTTACATTTTCAATATTGTC--AGAACCTTCTA 6185 Query 101191 -TTCGACGGTAATAGTTTTGCCCGTCAATGTTTTAATAAAAATTTGCATTAT 101241 ||| | ||||| ||||| || || | ||||||| ||| ||||||||||| Sbjct 6186 CTTCTAAAGTAATGGTTTTACCAGTGAGAGTTTTAACAAAGATTTGCATTAT 6237 >seq2 Length=540591 Score = 82.4 bits (90), Expect = 6e-11 Identities = 101/136 (74%), Gaps = 4/136 (3%) Strand=Plus/Minus Query 101012 CCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCC 101071 || |||| |||||||| || | ||| | ||||||||||||||| ||||||||||| | Sbjct 31878 CCACCTCTTAATCTTAAGACTAAGTGGAGAGTTGATTCTTTTTGGATATTGTAATCAG-- 31821 Query 101072 ATAGTTTTGGA--ATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGG 101129 | || | || |||||| |||||||| || ||| | || | |||||||| ||| | Sbjct 31820 AGAGGGTACGACCATCTTCTAATTGTTTACCGGCAAAGATTAATCTTTGTTGATCTGGTG 31761 Query 101130 GCACGCCTTCTTTGTC 101145 | | |||||||| || Sbjct 31760 GGATACCTTCTTTATC 31745 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 409655822237223