Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20firmibasis_20[genbank_20GCA_5F000277485.1_202012-07- 10] 997 sequences; 30,559,666 total letters Query= NC_031761.1 Length=131855 Score E Sequences producing significant alignments: (Bits) Value seq224 107 2e-18 seq160 104 2e-17 seq175 98.7 8e-16 seq64 98.7 8e-16 seq62 93.3 4e-14 >seq224 Length=37943 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 |||||||||||||| ||||| |||||||| || |||||||| | || ||| || Sbjct 19717 ATGCAAATTTTTGTTAAAACTTTGACCGGTAAGACCATTACTCTTGAGGTTGAAGGTAGT 19658 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| ||| | || ||| ||||| ||||||||||| | || |||||| Sbjct 19657 GATAACATTGAAAATGTTAAAGCCAAAATCCAAGACAAAGAAGGTATCCCACCAGATCAA 19598 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 ||| | ||||||| || || |||||||| |||||| | ||| | | ||||| ||| Sbjct 19597 CAACGTCTTATTTTCGCCGGTAAACAATTAGAAGATGGTCGTACTCTTTCTGATTACAAT 19538 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTT 111311 || ||||||||||| || || || ||||| || Sbjct 19537 ATTCAAAAAGAATCAACTCTCCACTTAGTCTT 19506 Score = 105 bits (116), Expect = 6e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 111099 AATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111158 ||||||||||||||| ||||| || || || ||||| |||||| | ||| ||| Sbjct 20174 AATGCAAATTTTTGTTAAAACATTAACTGGTAAAACTATTACCTTAGAAGTTGAAGGTTC 20115 Query 111159 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111218 ||| ||| | || ||| ||||| ||||||||||| |||| ||||| Sbjct 20114 TGATAACATTGAAAATGTTAAAGCCAAAATCCAAGACAAAGAAGGTATTCCACCAGATCA 20055 Query 111219 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111278 |||| | ||||||| ||| || |||||||| ||||| | ||| | | ||||| || Sbjct 20054 ACAACGTCTTATTTTTGCCGGTAAACAATTAGAAGACGGTCGTACTCTTTCTGATTACAA 19995 Query 111279 TATACAAAAAGAATCTACACTACATTTAGTGTT 111311 ||| ||||||||||| || || || ||||| || Sbjct 19994 TATTCAAAAAGAATCAACTCTCCACTTAGTCTT 19962 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 |||||||||||||||||||| || || || |||||||| || | ||| ||| Sbjct 19033 ATGCAAATTTTTGTCAAAACCTTAACTGGTAAAACCATCACATTAGAAGTTGAAGGTTCA 18974 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| ||| | || ||| || ||| ||||||||||| | || || ||| Sbjct 18973 GATAACATTGAAAATGTTAAAGCCAAGATTCAAGACAAAGAAGGTATCCCACCAGACCAA 18914 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 ||||| | |||| ||| || |||||||| |||||| | ||| | | ||||||||| Sbjct 18913 CAAAGATTAATTTTTGCTGGTAAACAATTAGAAGATGGTCGTACTCTTTCTGATTATAAT 18854 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTG 111312 || ||||||||||| || || || ||||| ||| Sbjct 18853 ATTCAAAAAGAATCAACTCTCCACTTAGTCTTG 18821 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 |||||||| ||||||||||| || || || ||||| || || | ||| ||| ||| Sbjct 19261 ATGCAAATCTTTGTCAAAACCTTAACTGGTAAAACAATCACATTAGAAGTTGAAGGTAGC 19202 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| ||| | || ||| ||||||| ||||||||||| | || || ||| Sbjct 19201 GATAACATTGAAAATGTCAAAGCAAAAATTCAAGACAAAGAAGGTATCCCACCAGACCAA 19142 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 ||||| | |||| || || |||||||| ||||| | ||| | | ||||| ||| Sbjct 19141 CAAAGATTAATTTTCGCTGGTAAACAATTAGAAGACGGTCGTACTCTTTCTGATTACAAT 19082 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTG 111312 || ||||||||||| || || || ||||| ||| Sbjct 19081 ATTCAAAAAGAATCAACTCTCCACTTAGTCTTG 19049 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 |||||||| ||||| ||||| || || || |||||||| || | ||| ||| || Sbjct 19489 ATGCAAATCTTTGTAAAAACCTTAACTGGTAAAACCATCACTTTAGAAGTTGAAGGTAGT 19430 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| ||| | || || ||||| ||||||||||| | || |||||| Sbjct 19429 GATAACATTGAAAATGTTAAGGCCAAAATCCAAGACAAAGAAGGTATCCCACCAGATCAA 19370 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 ||| | ||||||| || || |||||||| ||||| | ||| | | ||||| ||| Sbjct 19369 CAACGTCTTATTTTCGCCGGTAAACAATTAGAAGACGGTCGTACTCTTTCTGATTACAAT 19310 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTT 111311 || ||||||||||| || || || ||||| || Sbjct 19309 ATTCAAAAAGAATCAACTCTCCACTTAGTCTT 19278 >seq160 Length=80418 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 111097 AAAATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCC 111156 || ||||||||||| || ||||| | || || ||||||||||| | ||| ||| | Sbjct 3301 AATATGCAAATTTTCGTTAAAACACTAACTGGTAAAACCATTACTCTCGAAGTTGAAGGC 3360 Query 111157 AGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGAT 111216 ||| ||| | || ||| ||||||| || |||||||| |||| ||| Sbjct 3361 TCTGATAACATTGAAAATGTTAAAGCAAAAATTCAAGATAAAGAAGGTATTCCACCAGAT 3420 Query 111217 CAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTAT 111276 |||||||| | |||| ||| || |||||||| |||||| | ||| | | || ||| Sbjct 3421 CAACAAAGATTAATTTTTGCTGGTAAACAATTAGAAGATGGTCGTACTTTATCAGACTAT 3480 Query 111277 AATATACAAAAAGAATCTACACTACATTTAGTGTT 111311 || || ||||||||||| || || |||||||| || Sbjct 3481 AACATTCAAAAAGAATCAACTCTTCATTTAGTTTT 3515 Score = 102 bits (112), Expect = 7e-17 Identities = 166/238 (70%), Gaps = 1/238 (0%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||||||||| || ||||| || || || |||||||| || ||||| ||| Sbjct 3532 ATGCAAATTTTCGTTAAAACCTTAACTGGTAAAACCATCACATTGGAAGTTGAAGGTTCT 3591 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| | ||| | ||||| ||||||| || |||||||| | | | |||||| Sbjct 3592 GATAATATTGAAAATGTAAAGGCAAAAATTCAAGATAAAGAAGGTATCCACCA-GATCAA 3650 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 ||||| | |||| ||| || || ||||| |||||| | ||| | | |||||||| Sbjct 3651 CAAAGATTAATTTTTGCTGGTAAGCAATTAGAAGATGGTCGTACTTTATCAGATTATAAC 3710 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCAATAAATAAA 111337 || ||||||||||| || || |||||||| || | | | ||||| ||| || ||| Sbjct 3711 ATTCAAAAAGAATCAACTCTTCATTTAGTTTTAAGATTAAGAGGTGGAAATTAAAAAA 3768 >seq175 Length=69793 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||||||||| |||||||| | || || || ||||| ||| ||||| ||| ||| Sbjct 5550 ATGCAAATTTTCGTCAAAACCCTCACTGGTAAGACCATCACCTTGGAAGTTGAAGGTAGC 5491 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| ||| | |||||| || ||| ||||||||||| |||| || ||| Sbjct 5490 GATAACATTGAGAATGTAAAAACCAAGATTCAAGACAAAGAAGGTATTCCACCAGACCAA 5431 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 ||||| | |||| || || ||||||||||||||| | ||| | | ||||| || Sbjct 5430 CAAAGATTGATTTTCGCTGGTAAACAATTGGAAGATGGTCGTACTCTTTCTGATTACAAC 5371 Query 111280 ATACAAAAAGAATCTACACTACATTTAGT 111308 || ||||| ||||| || || || || || Sbjct 5370 ATTCAAAAGGAATCCACTCTCCACTTGGT 5342 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 |||||||| ||||| || || || || || || ||||| || | ||| || | Sbjct 5778 ATGCAAATCTTTGTTAAGACATTAACTGGTAAGACCATCACTCTCGAAGTTGAGGGCTCA 5719 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| | ||| | || ||| ||||||| ||||||||||| | || || ||| Sbjct 5718 GATAATATTGAAAATGTGAAAACAAAAATTCAAGACAAAGAAGGTATCCCACCTGACCAA 5659 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGAT--TCTAAAACTATGGCCGATTATA 111277 ||||| | |||| || || ||||||||||||||| || | | ||| ||||||| | Sbjct 5658 CAAAGATTGATTTTCGCTGGTAAACAATTGGAAGATGGTCGTACATTAT--CCGATTACA 5601 Query 111278 ATATACAAAAAGAATCTACACTACATTTAGT 111308 | || ||||||||||| || || |||||||| Sbjct 5600 ACATTCAAAAAGAATCCACTCTCCATTTAGT 5570 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 111099 AATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111158 ||||||||| ||||| ||||| | || || ||||||||||| | ||| ||| Sbjct 6235 AATGCAAATCTTTGTTAAAACTCTCACTGGTAAAACCATTACTTTAGAAGTAGAAGGTTC 6176 Query 111159 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111218 || | ||| | |||||| |||||| ||||| ||||| |||| || || Sbjct 6175 TGACAATATTGAAAATGTAAAAACCAAAATTCAAGACAAGGAAGGTATTCCACCAGACCA 6116 Query 111219 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111278 |||| | ||||||| || || ||||||||||||||| | ||| | | ||||| || Sbjct 6115 ACAACGTCTTATTTTCGCTGGTAAACAATTGGAAGATGGTCGTACTCTTTCTGATTACAA 6056 Query 111279 TATACAAAAAGAATCTACACTACATTTAGT 111308 || ||||| || || || || ||||| || Sbjct 6055 CATTCAAAAGGAGTCCACTCTCCATTTGGT 6026 >seq64 Length=175976 Score = 98.7 bits (108), Expect = 8e-16 Identities = 152/218 (70%), Gaps = 12/218 (6%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||||||||| || ||||| | || || ||||||||||| | ||| ||| Sbjct 78454 ATGCAAATTTTCGTTAAAACTCTCACAGGTAAAACCATTACTCTCGAAGTAGAA------ 78401 Query 111160 GATTCTG------TTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTC 111213 | ||||| ||| | || ||| ||| ||| || |||||||| | || Sbjct 78400 GGTTCTGACAACATTGAAAATGTCAAAGCAAAGATTCAAGATAAAGAAGGTATCCCACCA 78341 Query 111214 GATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGAT 111273 || |||||| | ||||||| ||| ||||||||||| || ||| | ||| | | ||| Sbjct 78340 GACCAACAACGTCTTATTTTTGCTGGCAAACAATTAGAGGATGGTCGTACTCTCTCAGAT 78281 Query 111274 TATAATATACAAAAAGAATCTACACTACATTTAGTGTT 111311 |||||||| ||||||||||| || || |||||||| || Sbjct 78280 TATAATATTCAAAAAGAATCAACTCTTCATTTAGTTTT 78243 >seq62 Length=176758 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 111093 TTTAAAAATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGA 111152 ||||| |||||||||||||| ||||| | || || ||||| || || ||||| || Sbjct 76576 TTTAATTATGCAAATTTTTGTTAAAACTCTCACTGGTAAAACAATCACATTGGAAGTTGA 76635 Query 111153 ACCCAGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGT 111212 | ||| | | | || ||| ||||| |||||||||||| |||| Sbjct 76636 AGGTTCTGATAACATCGAGAATGTTAAAGCCAAAATCCAAGACAAAGAAGGCATTCCACC 76695 Query 111213 CGATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGA 111272 ||||||||| | ||||||| || || |||||||| |||||| | ||| | | || Sbjct 76696 AGATCAACAACGTCTTATTTTCGCCGGTAAACAATTAGAAGATGGTCGTACTCTTTCTGA 76755 Query 111273 TTATAATATACAAAAAGAATCTACACTACATTTAGT 111308 || || || ||||||||||| || || |||||||| Sbjct 76756 CTACAACATTCAAAAAGAATCCACCCTCCATTTAGT 76791 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 |||||||||||||| ||||| | || || ||||||||||| | ||| ||| || Sbjct 77039 ATGCAAATTTTTGTTAAAACCCTCACTGGTAAAACCATTACTCTCGAAGTCGAAGGTAGT 77098 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 || ||| | || ||| ||||| ||||||||||| |||| |||||| Sbjct 77099 GACAACATTGAGAATGTTAAAGCCAAAATCCAAGACAAAGAAGGTATTCCACCAGATCAA 77158 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 ||| | ||||||| || || |||||||| ||||| | ||| | | || || || Sbjct 77159 CAACGTCTTATTTTCGCCGGTAAACAATTAGAAGACGGTCGTACTCTCTCTGACTACAAC 77218 Query 111280 ATACAAAAAGAATCTACACTACATTTAGT 111308 || ||||||||||| || || |||||||| Sbjct 77219 ATCCAAAAAGAATCAACCCTCCATTTAGT 77247 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 |||||||||||||| ||||| | || || ||||||||||| | || ||| || Sbjct 77495 ATGCAAATTTTTGTTAAAACCCTCACTGGTAAAACCATTACTCTCGAGGTTGAAGGTAGT 77554 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 || | ||| | || ||| ||||| ||||||||||| |||| |||||| Sbjct 77555 GACAATATTGAGAATGTCAAAGCCAAAATCCAAGACAAAGAAGGTATTCCACCAGATCAA 77614 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 ||| | ||||||| || || |||||||| ||||| | ||| | | || || || Sbjct 77615 CAACGTCTTATTTTCGCCGGTAAACAATTAGAAGACGGTCGTACTCTCTCTGACTACAAC 77674 Query 111280 ATACAAAAAGAATCTACACTACATTTAGT 111308 || ||||||||||| || || || ||||| Sbjct 77675 ATCCAAAAAGAATCCACTCTCCACTTAGT 77703 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421806074598472