Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20intermedium_20[genbank_20GCA_5F000277465.1_202012- 07-10] 3,111 sequences; 30,529,520 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq1364 149 1e-30 seq1768 109 1e-18 seq500 109 1e-18 seq1712 107 4e-18 seq1465 107 4e-18 seq1263 107 4e-18 seq363 107 4e-18 seq231 107 4e-18 seq1809 87.8 4e-12 seq2987 84.2 5e-11 seq1757 84.2 5e-11 seq940 84.2 5e-11 seq717 84.2 5e-11 seq495 84.2 5e-11 seq25 84.2 5e-11 >seq1364 Length=6249 Score = 149 bits (164), Expect = 1e-30 Identities = 284/415 (68%), Gaps = 14/415 (3%) Strand=Plus/Minus Query 61089 CAAGCATCAACATCTGAACTGTATGGAAAAGTTCAAGAAATTCCTCAAACAGAAAGGACT 61148 ||||||||||| |||||||| ||||| ||||||||||| ||||| ||| |||| | || Sbjct 4954 CAAGCATCAACCTCTGAACTCTATGGTAAAGTTCAAGAGATTCCACAATCAGAGACCACA 4895 Query 61149 CCGTTTTATCCTCGTAGCCCGTATGGTGTTGCAAAACTATACGCTTACTGGAT--TTGTA 61206 || || ||||| ||| || || | |||||||||| |||||| || ||||| |||| Sbjct 4894 CCATTCTATCCACGTTCACCATACGCCGTTGCAAAACAATACGCCTATTGGATCGTTGT- 4836 Query 61207 AAAATTACCGCGAGTCGTATGGAATGTTTGTATGTAACTCGATTTGTTTCAATCACGAGA 61266 ||| || || || | || | |||| || ||| || || | |||||||| || Sbjct 4835 -AAACTATCGTGAAGCATACGATATGTATGCATGCAATGGTATCTTGTTCAATCATGAAT 4777 Query 61267 GTCCCAATAGAGGTCATCAGTTTGTGACTCGTAAAATTACGAAGGCGGTTGCAAATATTT 61326 || |||||||| ||||| ||| | || || || ||||| |||| Sbjct 4776 CACCACGTAGAGGTCCAACTTTTGTAACTAGAAAGATCACTCGTTTCGTTGCTGGTATTG 4717 Query 61327 TTAACGGTGTCGAAAAATGCATGTATCTA----GGAAACATAGACTCTAAAAGAGATTGG 61382 ||| ||| ||| | | |||| || || || | ||||| | |||||| Sbjct 4716 CATGTGGT----AAAGATGAAATTCTCTACTTGGGTAATATCAATGCTAAACGTGATTGG 4661 Query 61383 GGATATGCGGAAGATTATATCGAGGCTATGTGGTTGATGTTGCAACAAGATACTCCAGAT 61442 || |||| ||||||| ||||||| |||||||| ||||| |||||||| | ||||| Sbjct 4660 GGTCATGCTAGAGATTATGTCGAGGCAATGTGGTTAATGTTACAACAAGAGAAACCAGAG 4601 Query 61443 GACTACGTTATTGCGACTGGACAGACGACGAGTGTCCGTGAATTCGT--AAAAAT 61495 || | |||||| || ||||| | || ||| |||||||| || |||||| Sbjct 4600 GATTTCGTTATCGCCACTGGTGAAACTCACTCTGTTCGTGAATTTGTTGAAAAAT 4546 >seq1768 Length=4924 Score = 109 bits (120), Expect = 1e-18 Identities = 68/73 (93%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||||||||||| ||||||||||||||| ||||||||| Sbjct 3167 TGCCCGGCTAGCTCAGTCGGTAGAGCGCCAGACTCTTAATCTGGTGGTCGGGGGTTCGAG 3108 Query 165769 CCCCACGATGGGC 165781 |||| || ||||| Sbjct 3107 CCCCCCGTTGGGC 3095 >seq500 Length=15179 Score = 109 bits (120), Expect = 1e-18 Identities = 68/73 (93%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||||||||||| ||||||||||||||| ||||||||| Sbjct 14452 TGCCCGGCTAGCTCAGTCGGTAGAGCGCCAGACTCTTAATCTGGTGGTCGGGGGTTCGAG 14511 Query 165769 CCCCACGATGGGC 165781 |||| || ||||| Sbjct 14512 CCCCCCGTTGGGC 14524 >seq1712 Length=5082 Score = 107 bits (118), Expect = 4e-18 Identities = 67/72 (93%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||||||||||| ||||||||||||||| |||||||||| Sbjct 469 GCCCGGCTAGCTCAGTCGGTAGAGCGCCAGACTCTTAATCTGGTGGTCGGGGGTTCGAGC 410 Query 165770 CCCACGATGGGC 165781 ||| || ||||| Sbjct 409 CCCCCGTTGGGC 398 Score = 107 bits (118), Expect = 4e-18 Identities = 67/72 (93%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||||||||||| ||||||||||||||| |||||||||| Sbjct 2294 GCCCGGCTAGCTCAGTCGGTAGAGCGCCAGACTCTTAATCTGGTGGTCGGGGGTTCGAGC 2235 Query 165770 CCCACGATGGGC 165781 ||| || ||||| Sbjct 2234 CCCCCGTTGGGC 2223 >seq1465 Length=5914 Score = 107 bits (118), Expect = 4e-18 Identities = 67/72 (93%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||||||||||| ||||||||||||||| |||||||||| Sbjct 3418 GCCCGGCTAGCTCAGTCGGTAGAGCGCCAGACTCTTAATCTGGTGGTCGGGGGTTCGAGC 3477 Query 165770 CCCACGATGGGC 165781 ||| || ||||| Sbjct 3478 CCCCCGTTGGGC 3489 >seq1263 Length=6771 Score = 107 bits (118), Expect = 4e-18 Identities = 67/72 (93%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||||||||||| ||||||||||||||| |||||||||| Sbjct 5328 GCCCGGCTAGCTCAGTCGGTAGAGCGCCAGACTCTTAATCTGGTGGTCGGGGGTTCGAGC 5387 Query 165770 CCCACGATGGGC 165781 ||| || ||||| Sbjct 5388 CCCCCGTTGGGC 5399 >seq363 Length=19827 Score = 107 bits (118), Expect = 4e-18 Identities = 67/72 (93%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||||||||||| ||||||||||||||| |||||||||| Sbjct 19650 GCCCGGCTAGCTCAGTCGGTAGAGCGCCAGACTCTTAATCTGGTGGTCGGGGGTTCGAGC 19591 Query 165770 CCCACGATGGGC 165781 ||| || ||||| Sbjct 19590 CCCCCGTTGGGC 19579 >seq231 Length=26445 Score = 107 bits (118), Expect = 4e-18 Identities = 67/72 (93%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||||||||||| ||||||||||||||| |||||||||| Sbjct 4118 GCCCGGCTAGCTCAGTCGGTAGAGCGCCAGACTCTTAATCTGGTGGTCGGGGGTTCGAGC 4059 Query 165770 CCCACGATGGGC 165781 ||| || ||||| Sbjct 4058 CCCCCGTTGGGC 4047 >seq1809 Length=4796 Score = 87.8 bits (96), Expect = 4e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 281559 GGATTATAACTGGGAATGTTAGTAGACCAACCGGTTCCAATACCACTTGAACCATTTACC 281618 ||||| ||| | ||||| || | |||||||| || ||||||||| | ||||||||||| Sbjct 1875 GGATTGTAATTTGGAATTGTACTTGACCAACCTGTACCAATACCAATACAACCATTTACC 1934 Query 281619 AAAATACTCGGGATAATAGGTACATAACATTCTGGTTCAATTTTATCACCATCATC 281674 ||||| | || |||| ||| | ||| | | ||||| || ||| | ||||||||| Sbjct 1935 AAAATCATTGGAATAACAGGAATATAGAACTTTGGTTGAACTTTTTTACCATCATC 1990 >seq2987 Length=2256 Score = 84.2 bits (92), Expect = 5e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 165708 TTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGA 165767 |||||| |||||||||||||||||||| || ||||||| || ||||||| |||||||| Sbjct 2204 TTGCCCAGATAGCTCAGTCGGTAGAGCGCAAGGCTTTTAACCTTGTGGTCGGGGGTTCGA 2145 Query 165768 GCCCCACGATGGGC 165781 ||||| | ||||| Sbjct 2144 GCCCCCCTTTGGGC 2131 >seq1757 Length=4955 Score = 84.2 bits (92), Expect = 5e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 165708 TTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGA 165767 |||||| |||||||||||||||||||| || ||||||| || ||||||| |||||||| Sbjct 4226 TTGCCCAGATAGCTCAGTCGGTAGAGCGCAAGGCTTTTAACCTTGTGGTCGGGGGTTCGA 4285 Query 165768 GCCCCACGATGGGC 165781 ||||| | ||||| Sbjct 4286 GCCCCCCTTTGGGC 4299 >seq940 Length=8727 Score = 84.2 bits (92), Expect = 5e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 165708 TTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGA 165767 |||||| |||||||||||||||||||| || ||||||| || ||||||| |||||||| Sbjct 7307 TTGCCCAGATAGCTCAGTCGGTAGAGCGCAAGGCTTTTAACCTTGTGGTCGGGGGTTCGA 7248 Query 165768 GCCCCACGATGGGC 165781 ||||| | ||||| Sbjct 7247 GCCCCCCTTTGGGC 7234 >seq717 Length=10779 Score = 84.2 bits (92), Expect = 5e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 165708 TTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGA 165767 |||||| |||||||||||||||||||| || ||||||| || ||||||| |||||||| Sbjct 9495 TTGCCCAGATAGCTCAGTCGGTAGAGCGCAAGGCTTTTAACCTTGTGGTCGGGGGTTCGA 9554 Query 165768 GCCCCACGATGGGC 165781 ||||| | ||||| Sbjct 9555 GCCCCCCTTTGGGC 9568 >seq495 Length=15296 Score = 84.2 bits (92), Expect = 5e-11 Identities = 68/81 (84%), Gaps = 1/81 (1%) Strand=Plus/Minus Query 165701 AAAACGCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTG 165760 |||| ||| |||| |||||||||||||||||||| || ||||||| || ||||||| | Sbjct 11757 AAAAAGCT-GCCCAGATAGCTCAGTCGGTAGAGCGCAAGGCTTTTAACCTTGTGGTCGGG 11699 Query 165761 GGTTCGAGCCCCACGATGGGC 165781 |||||||||||| | ||||| Sbjct 11698 GGTTCGAGCCCCCCTTTGGGC 11678 >seq25 Length=66450 Score = 84.2 bits (92), Expect = 5e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 165708 TTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGA 165767 |||||| |||||||||||||||||||| || ||||||| || ||||||| |||||||| Sbjct 16231 TTGCCCAGATAGCTCAGTCGGTAGAGCGCAAGGCTTTTAACCTTGTGGTCGGGGGTTCGA 16290 Query 165768 GCCCCACGATGGGC 165781 ||||| | ||||| Sbjct 16291 GCCCCCCTTTGGGC 16304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057781835465930