Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20intermedium_20[genbank_20GCA_5F000277465.1_202012- 07-10] 3,111 sequences; 30,529,520 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq316 96.9 4e-15 >seq316 Length=22015 Score = 96.9 bits (106), Expect = 4e-15 Identities = 196/288 (68%), Gaps = 5/288 (2%) Strand=Plus/Minus Query 16199 AGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTT 16258 ||||| || || || ||||||| ||||| || | || | ||| || ||||| ||| Sbjct 20787 AGACAAGCAAAATCACAATGTAAACCTTCATCACGTGAAATCAATTCATTTGAAAATGTT 20728 Query 16259 AACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATG-ACCCCGAAAA 16317 || ||||||||| |||| || || ||||| || || | | ||| ||| | ||| Sbjct 20727 AAACCTGGCATTAAACCTCTCTTTTTCAACCAAAAAATTGAACAAAAACTACCACTGAAA 20668 Query 16318 GAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATT 16377 |||||||||||||| | |||||| || | || ||||| || | | || | || Sbjct 20667 -AATATACCCTCAACTGCTGCAAATGCAACCAAACGTTCTGCAAA---TGAATTTGAATC 20612 Query 16378 ACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGC 16437 | ||||||| | | ||||||| || || | ||| | ||| || ||||| || || Sbjct 20611 ATTAATCCATCTTAATGCCCATTCTGCCTTCTTTTTAACACATGGAATTGTTTCAATTGC 20552 Query 16438 CTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAAT 16485 ||||| ||||| ||||| || |||| | ||||| || ||||| Sbjct 20551 ATTAAATAATTTATCTTTAGTTTGTTTATCTTTAATATAAGTTTCAAT 20504 Score = 86.0 bits (94), Expect = 6e-12 Identities = 102/135 (76%), Gaps = 4/135 (3%) Strand=Plus/Minus Query 16500 TTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTA 16559 |||| || ||||| || || || || || ||||| |||||||| |||| || || | | Sbjct 20390 TTTCAGAATGTATATTTTCAATTGCAATTTGAAAACCATAGAAACATCTTGCTTCTGGAA 20331 Query 16560 TTTGTACTTC-CACGTAAA-ATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGC 16617 |||||||||| || |||| | ||| || || || ||||| || ||||| ||| ||| Sbjct 20330 TTTGTACTTCAGACATAAATCTAGTT--GCAAGATTTTCATTAACAATACCATCAGATGC 20273 Query 16618 AGCAAAAAACGCCAA 16632 ||||||||| ||||| Sbjct 20272 AGCAAAAAATGCCAA 20258 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511394512372520