Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20intermedium_20[genbank_20GCA_5F000277465.1_202012- 07-10] 3,111 sequences; 30,529,520 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq2826 154 2e-32 seq316 111 2e-19 seq339 89.7 6e-13 >seq2826 Length=2534 Score = 154 bits (170), Expect = 2e-32 Identities = 556/859 (65%), Gaps = 13/859 (2%) Strand=Plus/Plus Query 53705 GCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCA 53764 ||||| || || ||||| ||||| || | |||| | | ||||| || || ||| Sbjct 1200 GCAATTGAGGCGAGATTGCAAACTGCAATTTCATCTGGTGATGTGTATTGAATGATTTCA 1259 Query 53765 GTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACAC 53824 |||||||||||||||| | ||||| || | |||||||||||| || || || Sbjct 1260 GTGCAAAGATTACTACTACTAATGGTACCGAGATTTTGTTGATTGGATTTGGAATTGCAA 1319 Query 53825 GCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTC 53884 || |||||||| | |||||||| ||||||||||||| || ||||| ||||| || | Sbjct 1320 GCGTCCTTATACAAGATGAATGGTGTACCAGTTTCAACTTGTGATTCCATAATGGCGAAC 1379 Query 53885 CAGACGACACGAGCCTTTATTATAGAT-TTGT-ATCTCTTTTCTCTTTCGTATAGTGTAT 53942 || | | | || || |||| | | ||| | ||| | | | | ||| | || Sbjct 1380 CAAAGTTCTTGTGCTTTGATTACACGTCTTGCGAGGTCTGGTGT-TGCCTCATACTTTA- 1437 Query 53943 ACAATCGTTCAAACTCGTCTCCCCAAACATTGTCC---AATCCAGGACATTCATCCGGAC 53999 | | | || | ||| || | | || | || || ||| | |||| Sbjct 1438 AGTAGAGGGCACGATGTTCTTGGGAATGAGTTTCAGCGAGACCGGGTGCTTCGTTTGGAC 1497 Query 54000 ACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAA 54059 | | | ||||| || || | | | || || | |||||||| |||| || ||| | Sbjct 1498 AAAAGAGTGACCAATCACCATTTTGTTCGACACGCTCCATAAAGATATCACTAACCCAGA 1557 Query 54060 GAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCG 54118 | || ||| ||||||||||| | ||| ||||| || || || || || || |||||| Sbjct 1558 GGGC-ATAGAATAGATCTCTAGCTCTCATCTCCTCCTTGCCAGTGTTTTTCTTGAGATCG 1616 Query 54119 AGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGT 54178 | ||| | | | ||| | |||||| || |||||||||| || | | || | | Sbjct 1617 ATAAACTCAAAGACATCGGCATGCCATGGCTCCAAGTATACGGCAAAGGCACCCTTTCTT 1676 Query 54179 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 54238 ||| || || ||||| | ||| | |||||| | ||| |||| | | |||||| | Sbjct 1677 TTGCCACCACCTTGATCGACGTAACGAGCGGTATCATTGAAAACACGAAGCATTGGTACC 1736 Query 54239 ATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTA 54298 | ||||||| | |||||||| || ||||| ||| | ||||||||| ||| Sbjct 1737 AAACCATTGCTAGTGCCATTGGTACCACGAATATAACTTTGAGCGGCACGAATTTTATGT 1796 Query 54299 ATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCA 54358 | | | ||| || || || || | || || || ||||| ||| |||| || || ||| Sbjct 1797 ACGGCAACACCAATACCACCGGCACTCTTTGAAATCAATGCACATTGTTTCAAGGTGTCA 1856 Query 54359 TAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATT--TGGT 54416 ||||| || || || ||| ||| |||| | || | ||||| ||||||| |||| Sbjct 1857 TAGATACCATCGATTGAATCCTCCTTCATTTGAACCAAGAAACATGAAGACATTTGTGGT 1916 Query 54417 GACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAA 54476 || | || || || || ||||| || || | || || || || ||| || || | Sbjct 1917 GA--AGGTGTACCAGCGTTGAATAATGTTGGTGTGGCATGTGTGAATAGTTTCTCCGATA 1974 Query 54477 GTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACAC 54536 | | || || | ||| || || || || ||| ||| || || | | |||| Sbjct 1975 GACGTCGATAGGTGTTGATCGCAGACTCAATGTCCTCGCCATGGATACCAATGGAAACAC 2034 Query 54537 GCATTAACATGTGCTGAGG 54555 |||| ||||| || || || Sbjct 2035 GCATCAACATATGTTGTGG 2053 Score = 82.4 bits (90), Expect = 9e-11 Identities = 161/238 (68%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 52808 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 52867 ||||||||||| | | | | || || ||||| ||||||||||| || || |||| | Sbjct 270 GTGAATTGAATTGCATCAGCAGCTGGACGAGTACGAAGATAGTACATACCAGTCTTTAAA 329 Query 52868 CCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATA 52927 || |||| ||||| ||||| || ||||||| | | | || || || || Sbjct 330 CCTTTCTTCCAAGAATAAAAGTGCATTGAGGTGAGTTTGGCAAAGGTTGGTTCAGCGATG 389 Query 52928 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 52987 | || | | |||||||||||| ||||| || || | || || ||||| | ||| Sbjct 390 AAAACGTTGAAACTTTGACTTTGATCAATGAAAGCACCACGATCAGCGGCCATATCAATG 449 Query 52988 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 53045 | || |||| |||||||||||| |||||||| | | || | || ||||||| Sbjct 450 AGAGTTCTTTGACGAATTTCCCAAACGGTTTTATAGAGTTCTTTCAATTCATCTGGAA 507 >seq316 Length=22015 Score = 111 bits (122), Expect = 2e-19 Identities = 115/148 (78%), Gaps = 2/148 (1%) Strand=Plus/Minus Query 24423 CTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCC 24482 ||||| |||| ||||| || |||||||| || |||||||| || ||||||||||| || Sbjct 20397 CTATAGGTTTCAGAATGTATATTTTCAATTGCAATTTGAAAACCATAGAAACATCTTGCT 20338 Query 24483 TCGGTAATCTGTACTTCTATACA-AAATCGTTCTGCTAAATTTTCATTCACTATTCCGTC 24541 || | ||| |||||||| | ||| ||||| ||| | ||||||||| || || || || Sbjct 20337 TCTGGAATTTGTACTTC-AGACATAAATCTAGTTGCAAGATTTTCATTAACAATACCATC 20279 Query 24542 ACTGGCTGCAAAAAACGCCAATACATGT 24569 | || |||||||| ||||| |||||| Sbjct 20278 AGATGCAGCAAAAAATGCCAAAACATGT 20251 Score = 107 bits (118), Expect = 2e-18 Identities = 205/298 (69%), Gaps = 8/298 (3%) Strand=Plus/Minus Query 24134 ACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAG 24193 ||| || ||||| || |||| ||| || || | ||| ||||| || ||||| || | Sbjct 20785 ACAAGCAAAATCACAATGTAAACCTTCATCACGTGAAATCAATTCATTTGAAAATGTTAA 20726 Query 24194 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAA 24253 || ||||||| || | |||||| | |||||| || || ||| ||| || || Sbjct 20725 ACCTGGCATTAAACCTCTCTTTTTCAACCAAAAAATTGAACAAAAACTACCACTGAAAAA 20666 Query 24254 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTG--TCATGT 24311 || || || ||||| ||||| |||| | | |||| || | | || |||| Sbjct 20665 TATACCCTCAACTGCTGCAAATGCAACCAAACGTTCTGCAAAT--GAATTTGAATCATTA 20608 Query 24312 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTA 24371 ||||| || ||||| || ||||||||||| ||||| || ||||| || || |||||| Sbjct 20607 ATCCATCTTAATGCCCATTCTGCCTTCTTTTTAACACATGGAATTGTTTCAATTGCATTA 20548 Query 24372 AAGAGATAGttttt--ttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATA 24427 || | | | ||| || || ||||||||| ||| || ||||| |||||||| || Sbjct 20547 AATAATTTATCTTTAGTTTGTT--TATCTTTAATATAAGTTTCAATTAAAAGACTTTA 20492 >seq339 Length=20847 Score = 89.7 bits (98), Expect = 6e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 71765 GTGATAGGTATTGATGAAGGACAGTTCTTTCCAGACATTGTTGAATTCTGTGAGCGTATG 71824 || || |||||||||||||| || || || |||||| |||| |||| |||| | | Sbjct 16065 GTAATTGGTATTGATGAAGGTCAATTTTTCCCAGACGTTGTACAATTTAGTGAAGATTTA 16124 Query 71825 GCAAACGAAGGAAAAATAGTTATAGTAGCCGCACTCGATGGGACATTTCAACGTAAACCG 71884 ||||| |||| |||| ||||| | |||||||||||||| ||||| ||| | ||||| Sbjct 16125 GCAAATCAAGGTAAAACCGTTATTATTGCCGCACTCGATGGTACATTCCAAAGAAAACCA 16184 Query 71885 TT 71886 || Sbjct 16185 TT 16186 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593698511651280