Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20intermedium_20[genbank_20GCA_5F000277465.1_202012- 07-10] 3,111 sequences; 30,529,520 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq268 96.9 3e-15 seq183 91.5 1e-13 seq89 91.5 1e-13 seq356 89.7 4e-13 seq1461 87.8 2e-12 seq64 87.8 2e-12 seq52 87.8 2e-12 >seq268 Length=24546 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 28958 AAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACC 29017 |||||||||||| || | ||||| || || || |||||||| || ||| ||| Sbjct 17609 AAAAATGCAAATTTTTGTTAAAACTTTAACTGGAAAAACCATAACTCTTGAAGTTGAAGG 17550 Query 29018 CGCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGA 29077 |||| | | | || | || ||||||| |||| ||||| | || ||| Sbjct 17549 TTCAGATAATATTGAAAATGTAAAAGCAAAAATTCAAAATAAGGAAGGAATTCCTCCAGA 17490 Query 29078 TCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTA 29137 |||||||||| | |||||||| || |||||| |||||||| ||| | | ||||| Sbjct 17489 TCAACAAAGATTAATCTTTGCTGGTAAACAATTGGAAGATGGTCGTACTTTATCAGATTA 17430 Query 29138 CAATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||||||||| |||||||| || ||||| | || ||| || | || || || Sbjct 17429 CAATATTCAAAAGGAATCAACACTTCATTTAGTTTTAAGACTTCGTGGTGG 17379 >seq183 Length=30623 Score = 91.5 bits (100), Expect = 1e-13 Identities = 103/136 (76%), Gaps = 4/136 (3%) Strand=Plus/Plus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 |||||||||||| | || ||||||||||||| | |||||||| || |||||| | ||| Sbjct 20414 GATAAAGAAGGTATCCCACCAGATCAACAAAGATTAATCTTTGCCGGTAAACAATTAGAA 20473 Query 29115 GA--TTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGT 29172 || || | || | | ||||||||||| || || ||||| ||||| ||| | || | Sbjct 20474 GACGGTCGTACCCTCT--CTGATTACAATATCCAAAAAGAATCAACTCTCCACTTAGTCT 20531 Query 29173 TACGATTACGAGGAGG 29188 || ||||| |||| || Sbjct 20532 TAAGATTAAGAGGTGG 20547 >seq89 Length=43963 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 28959 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 29018 || |||||||| ||| | ||||| || || || |||||||| || |||| ||| Sbjct 14107 AAGATGCAAATCTTCGTTAAAACCTTAACTGGTAAAACCATCACTCTCGAAGTTGAAGGT 14166 Query 29019 GCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 29078 |||| | | | | | || || ||| || ||||||||| | || |||| Sbjct 14167 TCAGACAACATCGAAAACGTCAAAGCCAAGATTCAAGACAAAGAAGGTATCCCACCAGAT 14226 Query 29079 CAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTAC 29138 |||||| | ||||||||||| || |||||| | |||||| ||| | ||||||| Sbjct 14227 CAACAACGTCTTATCTTTGCCGGTAAACAATTAGAAGATGGTCGTACTTTATCCGATTAT 14286 Query 29139 AATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || || || |||||||| || || ||| | || ||| ||||| |||| || Sbjct 14287 AACATCCAAAAGGAATCAACCCTCCACTTAGTTTTAAGATTAAGAGGTGG 14336 >seq356 Length=19801 Score = 89.7 bits (98), Expect = 4e-13 Identities = 110/149 (74%), Gaps = 1/149 (1%) Strand=Plus/Minus Query 29040 AAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCG 29099 ||||||| | || |||||||||||| | || ||||||||||||| | || || || Sbjct 11506 AAGCAAAGA-TTCAAGATAAAGAAGGTATTCCACCAGATCAACAAAGATTAATTTTCGCT 11448 Query 29100 GGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACT 29159 || |||||| | |||||| ||| | | ||||||||||| || || ||||| ||| Sbjct 11447 GGTAAACAATTAGAAGATGGTCGTACTCTCTCTGATTACAATATCCAAAAAGAATCCACT 11388 Query 29160 CTTCACATGGTGTTACGATTACGAGGAGG 29188 ||||| | || ||| ||||| |||| || Sbjct 11387 CTTCATTTAGTTTTAAGATTAAGAGGTGG 11359 >seq1461 Length=5937 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/136 (75%), Gaps = 4/136 (3%) Strand=Plus/Plus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 ||||| |||||| | || |||||||||| | || || || || || |||||| | ||| Sbjct 3987 GATAAGGAAGGTATCCCACCAGATCAACAACGTCTCATTTTCGCCGGTAAACAATTAGAA 4046 Query 29115 GAT--TCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGT 29172 ||| || | | ||| ||||||||||||| || || ||||| ||||||||| |||| Sbjct 4047 GATGGTCGTACATTAT--CCGATTACAATATCCAAAAAGAATCCACTCTTCACTTGGTAC 4104 Query 29173 TACGATTACGAGGAGG 29188 | ||||| |||| || Sbjct 4105 TTAGATTAAGAGGTGG 4120 >seq64 Length=50952 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 29046 AAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAA 29105 |||||| |||||||||||| | || |||||||||| | || |||||||| || ||| Sbjct 24426 AAAATTCAAGATAAAGAAGGTATTCCACCAGATCAACAACGTCTCATCTTTGCTGGTAAA 24367 Query 29106 CAACTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCAC 29165 ||| | |||||| ||| | | || || || ||||| || ||||| |||||||| Sbjct 24366 CAATTAGAAGATGGTCGTACTCTCTCTGACTATAACATTCAAAAAGAATCAACTCTTCAT 24307 Query 29166 ATGGTGTTACGATTACGAGGAGG 29188 | || ||| ||||| |||| || Sbjct 24306 TTAGTTTTAAGATTAAGAGGTGG 24284 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 |||||||||||| | || |||||||||| | ||||| || || || |||||| | ||| Sbjct 24189 GATAAAGAAGGTATCCCACCAGATCAACAACGTCTTATTTTCGCTGGTAAACAATTAGAA 24130 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174 ||| ||| | |||| || || || || |||||||| ||||| || |||| ||| Sbjct 24129 GATGGTCGTACTCTCTCCGACTATAACATCCAAAAGGAATCCACTCTCCATTTGGTTTTA 24070 Query 29175 CGATTACGAGGAGG 29188 ||||| |||| || Sbjct 24069 AGATTAAGAGGTGG 24056 >seq52 Length=54870 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 ||||||||| || | |||||||| || || |||||||||||| ||| ||| Sbjct 45235 AATGCAAATTTTTGTTAAAACATTAACTGGTAAAACCATTACCTTAGAAGTTGAAGGTAG 45294 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || | | | || | || |||||| |||||||||||| | || ||| || Sbjct 45295 TGATAACATTGAAAATGTAAAAGCTAAAATTCAAGATAAAGAAGGTATTCCACCAGACCA 45354 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 |||| | || || || || || |||||| |||||||| ||| | | ||||| || Sbjct 45355 ACAACGTCTCATTTTCGCTGGTAAACAATTGGAAGATGGTCGTACTCTCTCTGATTATAA 45414 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||| || || ||||| ||||| || |||| ||| ||||| |||| || Sbjct 45415 TATCCAAAAAGAATCCACTCTCCATTTGGTTTTAAGATTAAGAGGTGG 45462 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 |||||||||||| | || ||| |||||| | ||||| || || || |||||| | ||| Sbjct 45557 GATAAAGAAGGTATCCCACCAGACCAACAACGTCTTATTTTCGCTGGTAAACAATTAGAA 45616 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174 ||| ||| | ||||||||||||| || || ||||| ||||| || | || ||| Sbjct 45617 GATGGTCGTACTCTCTCCGATTACAATATCCAAAAAGAATCCACTCTCCATTTAGTTTTA 45676 Query 29175 CGATTACGAGGAGG 29188 ||||| |||| || Sbjct 45677 AGATTAAGAGGTGG 45690 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 |||||||||||| | || |||||||||| | ||||| || || || |||||| ||||| Sbjct 46241 GATAAAGAAGGTATCCCACCAGATCAACAACGTCTTATTTTCGCTGGTAAACAATTGGAA 46300 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174 ||| ||| | | || || || || || |||||||| ||||| || |||| ||| Sbjct 46301 GATGGTCGTACTCTTTCTGACTATAACATCCAAAAGGAATCCACTCTCCATTTGGTTTTA 46360 Query 29175 CGATTACGAGGAGG 29188 ||||| |||| || Sbjct 46361 AGATTAAGAGGTGG 46374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428319759506705