Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20intermedium_20[genbank_20GCA_5F000277465.1_202012- 07-10] 3,111 sequences; 30,529,520 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq268 105 5e-18 seq89 104 2e-17 seq183 100 2e-16 seq356 98.7 8e-16 seq1461 96.9 3e-15 seq64 96.9 3e-15 seq52 96.9 3e-15 seq140 89.7 4e-13 >seq268 Length=24546 Score = 105 bits (116), Expect = 5e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 25031 AAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACC 25090 |||||||||||| || | ||||| || || || |||||||| || ||| ||| Sbjct 17609 AAAAATGCAAATTTTTGTTAAAACTTTAACTGGAAAAACCATAACTCTTGAAGTTGAAGG 17550 Query 25091 CGCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGA 25150 |||| | | | || | || ||||||| |||| ||||| | || ||| Sbjct 17549 TTCAGATAATATTGAAAATGTAAAAGCAAAAATTCAAAATAAGGAAGGAATTCCTCCAGA 17490 Query 25151 TCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTA 25210 |||||||||| | |||||||| || ||||||||||||||| ||| | | ||||| Sbjct 17489 TCAACAAAGATTAATCTTTGCTGGTAAACAATTGGAAGATGGTCGTACTTTATCAGATTA 17430 Query 25211 CAATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 |||||||||||||||||| || ||||| | || ||| || | || || || Sbjct 17429 CAATATTCAAAAGGAATCAACACTTCATTTAGTTTTAAGACTTCGTGGTGG 17379 >seq89 Length=43963 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 25032 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 25091 || |||||||| ||| | ||||| || || || |||||||| || |||| ||| Sbjct 14107 AAGATGCAAATCTTCGTTAAAACCTTAACTGGTAAAACCATCACTCTCGAAGTTGAAGGT 14166 Query 25092 GCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 25151 |||| | | | | |||| || ||| || ||||||||| | || |||| Sbjct 14167 TCAGACAACATCGAAAACGTCAAAGCCAAGATTCAAGACAAAGAAGGTATCCCACCAGAT 14226 Query 25152 CAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTAC 25211 |||||| | ||||||||||| || |||||||| |||||| ||| | ||||||| Sbjct 14227 CAACAACGTCTTATCTTTGCCGGTAAACAATTAGAAGATGGTCGTACTTTATCCGATTAT 14286 Query 25212 AATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 || || ||||||||||| || || ||| | || ||| ||||| |||| || Sbjct 14287 AACATCCAAAAGGAATCAACCCTCCACTTAGTTTTAAGATTAAGAGGTGG 14336 >seq183 Length=30623 Score = 100 bits (110), Expect = 2e-16 Identities = 105/136 (77%), Gaps = 4/136 (3%) Strand=Plus/Plus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 |||||||||||| | || ||||||||||||| | |||||||| || |||||||| ||| Sbjct 20414 GATAAAGAAGGTATCCCACCAGATCAACAAAGATTAATCTTTGCCGGTAAACAATTAGAA 20473 Query 25188 GA--TTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGT 25245 || || | || | | ||||||||||| ||||| ||||| ||||| ||| | || | Sbjct 20474 GACGGTCGTACCCTCT--CTGATTACAATATCCAAAAAGAATCAACTCTCCACTTAGTCT 20531 Query 25246 TACGATTACGAGGAGG 25261 || ||||| |||| || Sbjct 20532 TAAGATTAAGAGGTGG 20547 >seq356 Length=19801 Score = 98.7 bits (108), Expect = 8e-16 Identities = 112/149 (75%), Gaps = 1/149 (1%) Strand=Plus/Minus Query 25113 AAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCG 25172 ||||||| | || |||||||||||| | || ||||||||||||| | || || || Sbjct 11506 AAGCAAAGA-TTCAAGATAAAGAAGGTATTCCACCAGATCAACAAAGATTAATTTTCGCT 11448 Query 25173 GGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACT 25232 || |||||||| |||||| ||| | | ||||||||||| ||||| ||||| ||| Sbjct 11447 GGTAAACAATTAGAAGATGGTCGTACTCTCTCTGATTACAATATCCAAAAAGAATCCACT 11388 Query 25233 CTTCACATGGTGTTACGATTACGAGGAGG 25261 ||||| | || ||| ||||| |||| || Sbjct 11387 CTTCATTTAGTTTTAAGATTAAGAGGTGG 11359 Score = 82.4 bits (90), Expect = 6e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 |||||||||||| | || |||||||||| | ||||| || || || |||||||||||| Sbjct 11264 GATAAAGAAGGTATCCCACCAGATCAACAACGTCTTATTTTCGCTGGTAAACAATTGGAA 11205 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCA 25237 ||| ||| | | || || || || ||||||||||| |||||||| Sbjct 11204 GATGGTCGTACTCTCTCTGACTATAACATCCAAAAGGAATCAACTCTTCA 11155 >seq1461 Length=5937 Score = 96.9 bits (106), Expect = 3e-15 Identities = 104/136 (76%), Gaps = 4/136 (3%) Strand=Plus/Plus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 ||||| |||||| | || |||||||||| | || || || || || |||||||| ||| Sbjct 3987 GATAAGGAAGGTATCCCACCAGATCAACAACGTCTCATTTTCGCCGGTAAACAATTAGAA 4046 Query 25188 GAT--TCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGT 25245 ||| || | | ||| ||||||||||||| ||||| ||||| ||||||||| |||| Sbjct 4047 GATGGTCGTACATTAT--CCGATTACAATATCCAAAAAGAATCCACTCTTCACTTGGTAC 4104 Query 25246 TACGATTACGAGGAGG 25261 | ||||| |||| || Sbjct 4105 TTAGATTAAGAGGTGG 4120 Score = 87.8 bits (96), Expect = 1e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 25119 AAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAA 25178 |||||| ||||| |||||| | || ||| |||||| | ||||| || || || ||| Sbjct 3522 AAAATTCAAGATAAGGAAGGTATCCCACCAGACCAACAACGTCTTATTTTCGCTGGTAAA 3581 Query 25179 CAATTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCAC 25238 |||||||||||| ||| | | |||||||| |||||||||||||| ||||| || Sbjct 3582 CAATTGGAAGATGGTCGTACTCTCTCTGATTACAACATTCAAAAGGAATCCACTCTCCAT 3641 Query 25239 ATGGTGTTACGATTACGAGGAGG 25261 | || | ||||| |||| || Sbjct 3642 TTAGTACTCAGATTAAGAGGTGG 3664 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| || | |||||||| || || || ||||| || ||| || | || Sbjct 4122 ATGCAAATCTTTGTTAAAACATTAACTGGTAAGACCATCACTCTTGAAGTTGAGGGCTCA 4181 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || | | | || | || ||||||| || ||||||||| | || ||| ||| Sbjct 4182 GATAATATTGAAAATGTTAAAACAAAAATTCAAGACAAAGAAGGTATCCCACCAGACCAA 4241 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 |||||| | || || || || ||||||||||||||| ||| | | |||||||| Sbjct 4242 CAAAGATTGATTTTCGCTGGTAAACAATTGGAAGATGGTCGTACTCTCTCTGATTACAAC 4301 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 |||||||||||||| || || || | || | ||||| |||| || Sbjct 4302 ATTCAAAAGGAATCCACCCTCCATTTAGTCCTTAGATTAAGAGGTGG 4348 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 || || |||||| | || |||||||||| | ||||| ||||| || |||||||| ||| Sbjct 4671 GACAAGGAAGGTATCCCACCAGATCAACAACGTCTTATTTTTGCTGGTAAACAATTAGAA 4730 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTA 25247 ||| ||| | | ||||||||||| ||||||||||| ||||| || | || | Sbjct 4731 GATGGTCGTACTCTTTCTGATTACAATATCCAAAAGGAATCAACTCTCCATTTAGTACTC 4790 Query 25248 CGATTACGAGGAGG 25261 ||||| |||| || Sbjct 4791 AGATTAAGAGGTGG 4804 >seq64 Length=50952 Score = 96.9 bits (106), Expect = 3e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 25119 AAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAA 25178 |||||| |||||||||||| | || |||||||||| | || |||||||| || ||| Sbjct 24426 AAAATTCAAGATAAAGAAGGTATTCCACCAGATCAACAACGTCTCATCTTTGCTGGTAAA 24367 Query 25179 CAATTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCAC 25238 ||||| |||||| ||| | | || || || |||||||| ||||| |||||||| Sbjct 24366 CAATTAGAAGATGGTCGTACTCTCTCTGACTATAACATTCAAAAAGAATCAACTCTTCAT 24307 Query 25239 ATGGTGTTACGATTACGAGGAGG 25261 | || ||| ||||| |||| || Sbjct 24306 TTAGTTTTAAGATTAAGAGGTGG 24284 Score = 93.3 bits (102), Expect = 3e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 |||||||||||| | || |||||||||| | ||||| || || || |||||||| ||| Sbjct 24189 GATAAAGAAGGTATCCCACCAGATCAACAACGTCTTATTTTCGCTGGTAAACAATTAGAA 24130 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTA 25247 ||| ||| | |||| || || || ||||||||||| ||||| || |||| ||| Sbjct 24129 GATGGTCGTACTCTCTCCGACTATAACATCCAAAAGGAATCCACTCTCCATTTGGTTTTA 24070 Query 25248 CGATTACGAGGAGG 25261 ||||| |||| || Sbjct 24069 AGATTAAGAGGTGG 24056 >seq52 Length=54870 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 ||||||||| || | |||||||| || || |||||||||||| ||| ||| Sbjct 45235 AATGCAAATTTTTGTTAAAACATTAACTGGTAAAACCATTACCTTAGAAGTTGAAGGTAG 45294 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 || | | | || | || |||||| |||||||||||| | || ||| || Sbjct 45295 TGATAACATTGAAAATGTAAAAGCTAAAATTCAAGATAAAGAAGGTATTCCACCAGACCA 45354 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 |||| | || || || || || ||||||||||||||| ||| | | ||||| || Sbjct 45355 ACAACGTCTCATTTTCGCTGGTAAACAATTGGAAGATGGTCGTACTCTCTCTGATTATAA 45414 Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 ||| ||||| ||||| ||||| || |||| ||| ||||| |||| || Sbjct 45415 TATCCAAAAAGAATCCACTCTCCATTTGGTTTTAAGATTAAGAGGTGG 45462 Score = 93.3 bits (102), Expect = 3e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 |||||||||||| | || ||| |||||| | ||||| || || || |||||||| ||| Sbjct 45557 GATAAAGAAGGTATCCCACCAGACCAACAACGTCTTATTTTCGCTGGTAAACAATTAGAA 45616 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTA 25247 ||| ||| | ||||||||||||| ||||| ||||| ||||| || | || ||| Sbjct 45617 GATGGTCGTACTCTCTCCGATTACAATATCCAAAAAGAATCCACTCTCCATTTAGTTTTA 45676 Query 25248 CGATTACGAGGAGG 25261 ||||| |||| || Sbjct 45677 AGATTAAGAGGTGG 45690 Score = 93.3 bits (102), Expect = 3e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 |||||||||||| | || |||||||||| | ||||| || || || |||||||||||| Sbjct 46241 GATAAAGAAGGTATCCCACCAGATCAACAACGTCTTATTTTCGCTGGTAAACAATTGGAA 46300 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTA 25247 ||| ||| | | || || || || ||||||||||| ||||| || |||| ||| Sbjct 46301 GATGGTCGTACTCTTTCTGACTATAACATCCAAAAGGAATCCACTCTCCATTTGGTTTTA 46360 Query 25248 CGATTACGAGGAGG 25261 ||||| |||| || Sbjct 46361 AGATTAAGAGGTGG 46374 >seq140 Length=35707 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 || ||||||||| | || ||| |||||| | ||||||||||| || |||||||| ||| Sbjct 25911 GACAAAGAAGGTATCCCACCAGACCAACAACGTCTTATCTTTGCCGGTAAACAATTAGAA 25852 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTA 25247 ||| ||| | | ||||| || |||||||||||||||||||| || | || | Sbjct 25851 GATGGTCGTACTCTTTCTGATTATAACATTCAAAAGGAATCTACTCTCCATTTAGTTCTT 25792 Query 25248 CGATTACGAGGAGG 25261 ||||| |||| || Sbjct 25791 AGATTAAGAGGTGG 25778 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 || ||||||||| | || ||| |||||| | ||||||||||| || |||||||| ||| Sbjct 25227 GACAAAGAAGGTATCCCACCAGACCAACAACGTCTTATCTTTGCCGGTAAACAATTAGAA 25168 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTA 25247 ||| ||| | | ||||| || |||||||||||||| ||||| || | || | Sbjct 25167 GATGGTCGTACTCTTTCTGATTATAACATTCAAAAGGAATCCACTCTCCATTTAGTTCTT 25108 Query 25248 CGATTACGAGGAGG 25261 ||||| |||| || Sbjct 25107 AGATTAAGAGGTGG 25094 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 |||||||||||| | || ||||||||||||| | || || || || |||||||| ||| Sbjct 25455 GATAAAGAAGGTATCCCACCAGATCAACAAAGATTAATTTTCGCTGGTAAACAATTAGAA 25396 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTA 25247 ||| ||| | | |||||||| || ||||| ||||| ||||| ||| | || | Sbjct 25395 GATGGTCGTACTCTTTCTGATTACAACATCCAAAAAGAATCCACTCTCCACTTAGTTCTT 25336 Query 25248 CGATTACGAGGAGG 25261 ||||| |||| || Sbjct 25335 AGATTAAGAGGTGG 25322 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410781224510954