Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20intermedium_20[genbank_20GCA_5F000277465.1_202012- 07-10] 3,111 sequences; 30,529,520 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq1461 111 2e-19 seq89 95.1 1e-14 seq140 89.7 5e-13 seq52 89.7 5e-13 >seq1461 Length=5937 Score = 111 bits (122), Expect = 2e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || ||||| ||||| || |||||||| ||| | || || |||| | | Sbjct 3666 ATGCAAATCTTTGTTAAAACACTCACTGGTAAAACCATTACCTTAGAAGTTGAAGGTAGC 3725 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | ||| ||| |||| ||||| || || ||||| | ||||| Sbjct 3726 GACAACATCGAGAATGTAAAGACAAAGATTCAAGACAAGGAAGGTATCCCACCAGACCAA 3785 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| ||||| | ||| || ||||| | || |||| || || || || |||||| Sbjct 3786 CAACGTCTCATTTTCGCTGGTAAACAATTAGAAGACGGTCGTACTCTTTCTGATTACAAC 3845 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||| ||||| |||| || ||| |||| Sbjct 3846 ATCCAAAAGGAATCCACTCTCCATTTAGT 3874 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| ||||| ||||| || |||||||| ||| | || || |||| | Sbjct 4350 ATGCAAATTTTCGTCAAAACCCTCACTGGTAAAACCATTACCTTAGAAGTTGAAGGTAGT 4409 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | ||| ||||||| ||||| || || ||||| | || || Sbjct 4410 GACAACATTGAGAATGTTAAGACCAAAATTCAAGACAAGGAAGGTATCCCACCAGATCAA 4469 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| ||||| | ||| || ||||| |||| || | || || || || |||||| Sbjct 4470 CAACGTCTCATTTTCGCCGGTAAACAATTGGAAGATGGTCGTACTCTTTCTGATTACAAC 4529 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||| ||||| |||| || ||| |||| Sbjct 4530 ATCCAAAAGGAATCCACTCTCCATTTAGT 4558 >seq89 Length=43963 Score = 95.1 bits (104), Expect = 1e-14 Identities = 152/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || |||||||| ||||| ||||| | || || ||||||||||| |||| || |||| Sbjct 14107 AAGATGCAAATCTTCGTTAAAACCTTAACTGGTAAAACCATCACTCTCGAAGTTGAAGGT 14166 Query 40747 ACCGACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | |||| | | | ||||| |||| | || |||| |||||||| || ||||| | || Sbjct 14167 TCAGACAACATCGAAAACG-TCAAAGCCAAGATTCAAGACAAAGAAGGTATCCCACCAGA 14225 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 || ||||| || |||| || || ||||| | || || | || || | ||| || Sbjct 14226 TCAACAACGTCTTATCTTTGCCGGTAAACAATTAGAAGATGGTCGTACTTTATCCGATTA 14285 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTT 40901 |||||||| ||||| | || || || |||| || Sbjct 14286 TAACATCCAAAAGGAATCAACCCTCCACTTAGTTTT 14321 >seq140 Length=35707 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || ||||| | || || ||||| ||||| | || || |||| | Sbjct 25776 ATGCAAATCTTTGTTAAAACTTTAACTGGTAAAACAATCACATTGGAAGTTGAAGGTTCT 25717 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | ||| |||| | ||||| | |||||||| || ||||| | ||||| Sbjct 25716 GATAACATTGAAAATGTCAAAGCCAAAATCCAAGACAAAGAAGGTATCCCACCAGACCAA 25657 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| ||||| | ||| || ||||| |||| || | || || || || |||||| Sbjct 25656 CAACGTCTCATTTTCGCTGGTAAACAATTGGAAGATGGTCGTACTCTTTCTGATTACAAC 25597 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||| || || |||| || || |||| Sbjct 25596 ATCCAAAAAGAATCCACTCTCCACTTAGT 25568 Score = 89.7 bits (98), Expect = 5e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||| || || ||||| || || || ||||||||||| |||| || |||| || Sbjct 26233 AATGCAAATTTTTGTTAAAACTCTTACTGGTAAAACCATCACTCTCGAAGTTGAAGGCAG 26174 Query 40749 CGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 |||| | | |||| | || | ||||| | |||||||| || || || | |||| Sbjct 26173 TGACAATATCGAGAACG-TAAAAGCTAAAATCCAAGACAAAGAAGGTATTCCACCAGACC 26115 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 | ||| || | || | ||| || ||||| | || || | || || || || |||| Sbjct 26114 AACAAAGATTAATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTTTCTGATTACA 26055 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||| || || |||| || ||| |||| Sbjct 26054 ACATCCAAAAAGAATCCACTCTTCATTTAGT 26024 >seq52 Length=54870 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || ||||| | || || |||||||| ||| | || || |||| | | Sbjct 45692 ATGCAAATTTTTGTTAAAACCTTAACTGGTAAAACCATTACCTTAGAAGTTGAAGGTAGC 45751 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | ||| | || | ||||||| || ||||| || ||||| | ||||| Sbjct 45752 GATAACATTGAAAATGTAAAAGCCAAAATTCAAGATAAAGAAGGTATCCCACCAGACCAA 45811 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||| || | || | ||| || || || | || || | || || ||| || |||||| Sbjct 45812 CAAAGATTAATTTTCGCTGGTAAGCAATTAGAAGATGGTCGTACTCTCTCTGATTACAAC 45871 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTT 40901 ||||| || ||| |||| || ||| |||| || Sbjct 45872 ATCCAAAAAGAGTCCACTCTCCATTTAGTTTT 45903 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515199164413360