Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20intermedium_20[genbank_20GCA_5F000277465.1_202012- 07-10] 3,111 sequences; 30,529,520 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq1461 107 2e-18 seq140 98.7 9e-16 seq64 98.7 9e-16 seq356 91.5 1e-13 seq52 84.2 2e-11 >seq1461 Length=5937 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || | |||||| | || || |||| || || || ||||||||||||||||| Sbjct 3666 TACCACCTCTTAATCTGAGTACTAAATGGAGAGTGGATTCCTTTTGAATGTTGTAATCAG 3607 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | ||| || ||| || | ||||| |||||| | || ||||| || || || || | Sbjct 3606 AGAGAGTACGACCATCTTCCAATTGTTTACCAGCGAAAATAAGACGTTGTTGGTCTGGTG 3547 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || || ||||| ||| |||||| ||| || | ||| | |||| | | || | Sbjct 3546 GGATACCTTCCTTATCTTGAATTTTGGTTTTTACATTTTCAATATTGTCGGAACCTTCTA 3487 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | |||| || | ||||| || || |||||||| |||||||| ||||| Sbjct 3486 CTTCGAGAGTAATTGTTTTTCCAGTAAGAGTTTTAACAAAAATTTGCAT 3438 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || | |||||| | || || |||| || || || ||||| ||||||||||| Sbjct 4578 TACCACCTCTTAATCTGAGTACTAAATGGAGAGTGGATTCCTTTTGGATGTTGTAATCAG 4519 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | ||| || ||| || | ||||| || ||| | |||||||| || ||||| || | Sbjct 4518 AAAGAGTACGACCATCTTCCAATTGTTTACCGGCGAAAATGAGACGTTGTTGATCTGGTG 4459 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || || ||||||||| |||||| ||||| | || | | |||| | | || | Sbjct 4458 GGATACCTTCCTTGTCTTGAATTTTGGTCTTAACATTCTCAATGTTGTCACTACCTTCAA 4399 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | || | ||| | ||||| || || || ||||| || ||||| ||||| Sbjct 4398 CTTCTAAGGTAATGGTTTTACCAGTGAGGGTTTTGACGAAAATTTGCAT 4350 Score = 98.7 bits (108), Expect = 9e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || | |||||| | || || |||| || || || ||||| ||||||||||| Sbjct 3894 TACCACCTCTTAATCTGAGTACTAAATGGAGAGTGGATTCCTTTTGGATGTTGTAATCAG 3835 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | ||| || || || | ||||| |||||| | |||||||| || || || || | Sbjct 3834 AAAGAGTACGACCGTCTTCTAATTGTTTACCAGCGAAAATGAGACGTTGTTGGTCTGGTG 3775 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || || ||||||||| ||| ||| || || | |||| | |||| | | || | Sbjct 3774 GGATACCTTCCTTGTCTTGAATCTTTGTCTTTACATTCTCGATGTTGTCGCTACCTTCAA 3715 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | || | ||| | ||||| || || || ||||| ||||| || ||||| Sbjct 3714 CTTCTAAGGTAATGGTTTTACCAGTGAGTGTTTTAACAAAGATTTGCAT 3666 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || | |||||| | || || |||| || || || ||||||||||||||||| Sbjct 4350 TACCACCTCTTAATCTAAGGACTAAATGGAGGGTGGATTCCTTTTGAATGTTGTAATCAG 4291 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | ||| || ||| || | ||||| |||||| | || | | || || || || | Sbjct 4290 AGAGAGTACGACCATCTTCCAATTGTTTACCAGCGAAAATCAATCTTTGTTGGTCTGGTG 4231 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || || || |||||| ||||||| |||||| | ||| | | || | || ||| | Sbjct 4230 GGATACCTTCTTTGTCTTGAATTTTTGTTTTAACATTTTCAATATTATCTGAGCCCTCAA 4171 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | || | || | || || || || | ||||| ||||| || ||||| Sbjct 4170 CTTCAAGAGTGATGGTCTTACCAGTTAATGTTTTAACAAAGATTTGCAT 4122 >seq140 Length=35707 Score = 98.7 bits (108), Expect = 9e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || | |||||| | || ||||||| || || |||||||| ||||||||||| Sbjct 25548 TACCACCTCTTAATCTAAGAACTAAGTGGAGAGTGGATTCTTTTTGGATGTTGTAATCAG 25607 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | ||| || ||| || | ||||| |||||| | |||||||| || || || || | Sbjct 25608 AAAGAGTACGACCATCTTCCAATTGTTTACCAGCGAAAATGAGACGTTGTTGGTCTGGTG 25667 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || || || |||||| ||||| ||| || | ||| | | | || | | || | Sbjct 25668 GGATACCTTCTTTGTCTTGGATTTTGGCTTTGACATTTTCAATGTTATCAGAACCTTCAA 25727 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | || | || | ||||| || || | |||||| ||||| || ||||| Sbjct 25728 CTTCCAATGTGATTGTTTTACCAGTTAAAGTTTTAACAAAGATTTGCAT 25776 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || | |||||| | || ||||||| || || |||||||| ||||||||||| Sbjct 25320 TACCACCTCTTAATCTAAGAACTAAGTGGAGAGTGGATTCTTTTTGGATGTTGTAATCAG 25379 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | ||| || ||| || | ||||| |||||| | || | | || ||||| || | Sbjct 25380 AAAGAGTACGACCATCTTCTAATTGTTTACCAGCGAAAATTAATCTTTGTTGATCTGGTG 25439 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || || || || ||| || || ||| || | ||||| | || | | ||| | Sbjct 25440 GGATACCTTCTTTATCTTGGATCTTGGCTTTTACATTTTCGATATTATCAGAACCCTCAA 25499 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| | ||| | ||||| || || | ||||| |||||||| ||||| Sbjct 25500 CCTCTAAGGTGATTGTTTTACCAGTTAAGGTTTTAACAAAAATTTGCAT 25548 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || | |||||| | || || |||| ||||| || ||||||||||| ||||| Sbjct 25776 TACCACCTCTTAATCTAAGAACTAAATGGAGAGTAGATTCCTTTTGAATGTTATAATCAG 25835 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | ||| || ||| || | ||||| || || |||| ||||| || || || || | Sbjct 25836 AAAGAGTACGACCATCTTCTAATTGTTTACCGGCAAAGATAAGACGTTGTTGGTCTGGTG 25895 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || || || |||||| ||||| ||| || | ||| | | | || | | |||| Sbjct 25896 GGATACCTTCTTTGTCTTGGATTTTGGCTTTGACATTTTCAATGTTATCGGAACCTTCGA 25955 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | || | || | ||||| || || |||||||| || || || ||||| Sbjct 25956 CTTCTAATGTGATTGTTTTACCAGTGAGAGTTTTAACGAAGATTTGCAT 26004 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || | |||||| | || || || | || || |||||||| ||||||||||| Sbjct 26004 TACCACCTCTTAATCTAAGAACTAAATGAAGAGTGGATTCTTTTTGGATGTTGTAATCAG 26063 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | ||| || ||| || | ||||| |||||| | || | | || || || || | Sbjct 26064 AAAGAGTACGACCATCTTCTAATTGTTTACCAGCGAAAATTAATCTTTGTTGGTCTGGTG 26123 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || || || |||||| ||||| ||| || | |||| |||| ||| || | Sbjct 26124 GAATACCTTCTTTGTCTTGGATTTTAGCTTTTACGTTCTCGATATTGTCACTGCCTTCAA 26183 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | |||| || | ||||| || || |||||||| |||||||| ||||| Sbjct 26184 CTTCGAGAGTGATGGTTTTACCAGTAAGAGTTTTAACAAAAATTTGCAT 26232 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || | |||||| | || || |||| || || || ||||||||||| ||||| Sbjct 25092 TACCACCTCTTAATCTAAGAACTAAATGGAGAGTGGATTCCTTTTGAATGTTATAATCAG 25151 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | ||| || ||| || | ||||| || || |||| ||||| || || || || | Sbjct 25152 AAAGAGTACGACCATCTTCTAATTGTTTACCGGCAAAGATAAGACGTTGTTGGTCTGGTG 25211 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || || || |||||| ||||| ||| || | ||| | | |||| | | || | Sbjct 25212 GGATACCTTCTTTGTCTTGGATTTTGGCTTTGACATTTTCAATGTTGTCACTACCTTCAA 25271 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | || | || | ||||| || || | |||||| ||||| || ||||| Sbjct 25272 CTTCAAGTGTAATTGTTTTACCAGTTAAAGTTTTAACAAAGATTTGCAT 25320 >seq64 Length=50952 Score = 98.7 bits (108), Expect = 9e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || | |||||| || || || || | || || |||||||||||||| || || Sbjct 24282 TACCACCTCTTAATCTTAAAACTAAATGAAGAGTTGATTCTTTTTGAATGTTATAGTCAG 24341 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | ||| || ||| || | ||||| ||||| |||||||||| || ||||| || | Sbjct 24342 AGAGAGTACGACCATCTTCTAATTGTTTACCAGCAAAGATGAGACGTTGTTGATCTGGTG 24401 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || || || || ||| |||||| ||| || | ||| | | | || | | || | Sbjct 24402 GAATACCTTCTTTATCTTGAATTTTGGCTTTTACATTTTCAATGTTATCACTACCTTCAA 24461 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | || | || | ||||| || || | |||||| |||||||| ||||| Sbjct 24462 CTTCCAAAGTAATTGTTTTACCAGTTAAAGTTTTAACAAAAATTTGCAT 24510 >seq356 Length=19801 Score = 91.5 bits (100), Expect = 1e-13 Identities = 160/231 (69%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || | |||||| | || ||||||| || || |||||||||||||| |||| | Sbjct 11585 TACCACCTCTTAATCTAAGAACTAAGTGGAGAGTGGATTCTTTTTGAATGTTATAAT--C 11642 Query 118570 TCATA--GTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGG 118627 | ||| || || ||| || | ||||| |||||| | || | | || || || || Sbjct 11643 TGATAAGGTACGACCATCTTCTAATTGTTTACCAGCGAAAATTAATCTTTGTTGGTCTGG 11702 Query 118628 AGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTC 118687 || || || || || ||| |||||| |||||| | ||| | | | || | | || Sbjct 11703 TGGAATACCTTCTTTATCTTGAATTTTAGCTTTAACATTTTCAATGTTATCAGAACCTTC 11762 Query 118688 GACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || | || | ||||| || || |||||||| |||||||| ||||| Sbjct 11763 AACTTCTAAAGTGATGGTTTTACCTGTAAGAGTTTTAACAAAAATTTGCAT 11813 >seq52 Length=54870 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || | |||||| || || || |||| || ||||||||||| ||||||||||| Sbjct 45920 TACCACCTCTTAATCTTAAAACTAAATGGAGAGTGGACTCTTTTTGGATGTTGTAATCAG 45861 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | ||| || ||| || | || || |||||| | || | | || || || || | Sbjct 45860 AGAGAGTACGACCATCTTCTAATTGCTTACCAGCGAAAATTAATCTTTGTTGGTCTGGTG 45801 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || || || || ||| |||||| ||| || | ||| | | | || | | || | Sbjct 45800 GGATACCTTCTTTATCTTGAATTTTGGCTTTTACATTTTCAATGTTATCGCTACCTTCAA 45741 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | || | ||| | ||||| || || | ||||| |||||||| ||||| Sbjct 45740 CTTCTAAGGTAATGGTTTTACCAGTTAAGGTTTTAACAAAAATTTGCAT 45692 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433813951184812