Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20intermedium_20[genbank_20GCA_5F000277465.1_202012- 07-10] 3,111 sequences; 30,529,520 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq1461 111 2e-19 seq140 91.5 2e-13 seq52 84.2 3e-11 >seq1461 Length=5937 Score = 111 bits (122), Expect = 2e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || |||||||| | | || ||||| | ||| |||||||| || |||||||||| Sbjct 3892 CCACCTCTTAATCTGAGTACTAAATGGAGAGTGGATTCCTTTTGGATGTTGTAATCAGAA 3833 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||| || |||| |||| || ||||||||||| ||||| || || ||||| | || Sbjct 3832 AGAGTACGACCGTCTTCTAATTGTTTACCAGCGAAAATGAGACGTTGTTGGTCTGGTGGG 3773 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | | ||||||| | ||| | ||||| || | || | | ||||||| ||| || Sbjct 3772 ATACCTTCCTTGT-CTTGAATCTTTGTCTTTACATTCTCGATGTTGTCGCTACCTTCAAC 3714 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | || |||||||| || || || || || |||||||||||||| Sbjct 3713 TTCTAAGGTAATGGTTTTACCAGTGAGTGTTTTAACAAAGATTTGCAT 3666 Score = 91.5 bits (100), Expect = 2e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 ||| |||||||| | | || ||||| | || |||||||| ||||||||||||| Sbjct 4805 TCCACCTCTTAATCTGAGTACTAAATGGAGAGTTGATTCCTTTTGGATATTGTAATCAGA 4746 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 ||||| || | || |||| || |||||||| || || || || || || || | || Sbjct 4745 AAGAGTACGACCATCTTCTAATTGTTTACCAGCAAAAATAAGACGTTGTTGATCTGGTGG 4686 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCGTCGCCACCGTGTCGCTCGATTCCA 43134 | | ||||||| | ||| | ||||| || | || | | |||| || ||| | Sbjct 4685 GATACCTTCCTTGT-CTTGAATCTTTGTCTTTACATTCTCAATGTTGTCACTACCTTCAA 4627 Query 43135 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | |||| || ||||| || || || || || || |||||||||||||| Sbjct 4626 CTTCGAGAGTAATGGTCTTACCAGTAAGAGTTTTAACAAAGATTTGCAT 4578 >seq140 Length=35707 Score = 91.5 bits (100), Expect = 2e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || |||||||| | | || ||||| | ||| || ||||| || |||||||||| Sbjct 26006 CCACCTCTTAATCTAAGAACTAAATGAAGAGTGGATTCTTTTTGGATGTTGTAATCAGAA 26065 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||| || | || |||| || ||||||||||| || | || || ||||| | || Sbjct 26066 AGAGTACGACCATCTTCTAATTGTTTACCAGCGAAAATTAATCTTTGTTGGTCTGGTGGA 26125 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | | || ||||| |||||| ||| | || | | |||| || ||| || Sbjct 26126 ATACCTTCTTTGTCTTGGATTTTAGCTTTTACGTTCTCGATATTGTCACTGCCTTCAACT 26185 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 |||| ||||||||||| || || || || || ||||| ||||||||| Sbjct 26186 TCGAGAGTGATGGTTTTACCAGTAAGAGTTTTAACAAAAATTTGCATT 26233 >seq52 Length=54870 Score = 84.2 bits (92), Expect = 3e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || |||||||| | || || ||||| | ||| ||| ||||| || |||||||||| Sbjct 45918 CCACCTCTTAATCTTAAAACTAAATGGAGAGTGGACTCTTTTTGGATGTTGTAATCAGAG 45859 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||| || | || |||| |||||||||||||| || | || || ||||| | || Sbjct 45858 AGAGTACGACCATCTTCTAATTGCTTACCAGCGAAAATTAATCTTTGTTGGTCTGGTGGG 45799 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | | || ||| | ||| |||| | ||| | | | | | ||||| ||| || Sbjct 45798 ATAC-CTTCTTTATCTTGAATTTTGGCTTTTACATTTTCAATGTTATCGCTACCTTCAAC 45740 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | || |||||||| || |||| || || ||||| |||||||| Sbjct 45739 TTCTAAGGTAATGGTTTTACCAGTTAAGGTTTTAACAAAAATTTGCAT 45692 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571795363443080