Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20intermedium_20[genbank_20GCA_5F000277465.1_202012- 07-10] 3,111 sequences; 30,529,520 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq316 141 9e-29 >seq316 Length=22015 Score = 141 bits (156), Expect = 9e-29 Identities = 204/287 (71%), Gaps = 3/287 (1%) Strand=Plus/Minus Query 16234 ACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAG 16293 |||||||||||||||||| || ||||| || | || || || ||||||||||| | Sbjct 20785 ACAAGCAAAATCACAATGTAAACCTTCATCACGTGAAATCAATTCATTTGAAAATGTTAA 20726 Query 16294 ACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAA 16353 ||||||||||| |||| ||||| | |||||| || | ||| |||| || || Sbjct 20725 ACCTGGCATTAAACCTCTCTTTTTCAACCAAAAAATTGAACAAAAACTACCACTGAAAAA 20666 Query 16354 TATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttc 16413 |||||| |||||||| |||||||||||||| || || | | | |||| | | Sbjct 20665 TATACCCTCAACTGCTGCAAATGCAACCAAACGTTCTGCAAA---TGAATTTGAATCATT 20609 Query 16414 tatccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATT 16473 |||||| || ||||| | ||| || | ||||||||| || | || |||||||| Sbjct 20608 AATCCATCTTAATGCCCATTCTGCCTTCTTTTTAACACATGGAATTGTTTCAATTGCATT 20549 Query 16474 AAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTA 16520 |||||| | || ||| || ||||| ||||||||| || |||| Sbjct 20548 AAATAATTTATCTTTAGTTTGTTTATCTTTAATATAAGTTTCAATTA 20502 Score = 98.7 bits (108), Expect = 9e-16 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 16526 CTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCT 16585 ||||| |||| ||||| ||||| || ||||| || ||||||||||| || ||||| ||| Sbjct 20397 CTATAGGTTTCAGAATGTATATTTTCAATTGCAATTTGAAAACCATAGAAACATCTTGCT 20338 Query 16586 TCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCG 16645 || | |||||||||||||| ||| || ||| | ||||| ||||| || ||||| Sbjct 20337 TCTGGAATTTGTACTTCAGACATAAATCTAGTTGCAAGATTTTCATTAACAATACCATCA 20278 Query 16646 CTAGCTGCAAAAAACGC 16662 || |||||||| || Sbjct 20277 GATGCAGCAAAAAATGC 20261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462494014064600