Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20intermedium_20[genbank_20GCA_5F000277465.1_202012- 07-10] 3,111 sequences; 30,529,520 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq1461 113 4e-20 seq52 95.1 1e-14 >seq1461 Length=5937 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||| ||||| | ||| || || || ||| ||||| || |||||||| || Sbjct 3892 CCACCTCTTAATCTGAGTACTAAATGGAGAGTGGATTCCTTTTGGATGTTGTAATCAGAA 3833 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || ||| |||| || | |||||| || ||||| || | || |||||||| || || Sbjct 3832 AGAGTACGACCGTCTTCTAATTGTTTACCAGCGAAAATGAGACGTTGTTGGTCTGGTGGG 3773 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | ||| |||||||| ||| ||| ||| || | | | | |||| | ||| || || Sbjct 3772 ATACCTTCCTTGTCTTGAATCTTTGTCTTTACATTCTCGATGTTGTCGCTACCTTCAACT 3713 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || | |||||| || || || || || || || |||||||||||||| Sbjct 3712 TCTAAGGTAATGGTTTTACCAGTGAGTGTTTTAACAAAGATTTGCAT 3666 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||| ||||| | ||||||||| || ||| || || || || ||||| ||| Sbjct 4120 CCACCTCTTAATCTAAGTACCAAGTGAAGAGTGGATTCTTTTTGGATATTGTAATCGGAT 4061 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 | | ||| | || || | |||||| |||||||| || | || ||||| || || || Sbjct 4060 AATGTACGACCATCTTCTAATTGTTTACCGGCGAAAATGAGACGTTGTTGATCTGGTGGG 4001 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | ||| ||||| || ||| ||| ||| || | | | | |||| | ||| || || Sbjct 4000 ATACCTTCCTTATCTTGAATCTTTGTCTTTACATTCTCAATGTTGTCACTACCTTCAACT 3941 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || | ||||| || || || || || || || |||||||||||||| Sbjct 3940 TCGAGAGTAATAGTTTTACCAGTAAGGGTTTTAACAAAGATTTGCAT 3894 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||| ||||| | ||| || || || || ||||| || || ||||| || Sbjct 4804 CCACCTCTTAATCTGAGTACTAAATGGAGAGTTGATTCCTTTTGGATATTGTAATCAGAA 4745 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || ||| | || || | |||||| || || || || | || ||||| || || || Sbjct 4744 AGAGTACGACCATCTTCTAATTGTTTACCAGCAAAAATAAGACGTTGTTGATCTGGTGGG 4685 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | ||| |||||||| ||| ||| ||| || | | | | |||| | ||| || || Sbjct 4684 ATACCTTCCTTGTCTTGAATCTTTGTCTTTACATTCTCAATGTTGTCACTACCTTCAACT 4625 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || | ||||| ||||| || || ||||| || |||||||||||||| Sbjct 4624 TCGAGAGTAATGGTCTTACCAGTAAGAGTTTTAACAAAGATTTGCAT 4578 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||| ||||| | ||| || || || ||| ||||| ||||||||||| || Sbjct 3664 CCACCTCTTAATCTGAGTACTAAATGGAGAGTGGATTCCTTTTGAATGTTGTAATCAGAG 3605 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || ||| | || |||| |||||| || ||||| || | || |||||||| || || Sbjct 3604 AGAGTACGACCATCTTCCAATTGTTTACCAGCGAAAATAAGACGTTGTTGGTCTGGTGGG 3545 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | ||| ||||| || |||||| || || | | |||| ||| || || Sbjct 3544 ATACCTTCCTTATCTTGAATTTTGGTTTTTACATTTTCAATATTGTCGGAACCTTCTACT 3485 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || | ||||| || || || || ||||| || ||||| |||||||| Sbjct 3484 TCGAGAGTAATTGTTTTTCCAGTAAGAGTTTTAACAAAAATTTGCAT 3438 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||| ||||| | || || || || ||| ||||| ||||||||||| || Sbjct 4348 CCACCTCTTAATCTAAGGACTAAATGGAGGGTGGATTCCTTTTGAATGTTGTAATCAGAG 4289 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || ||| | || |||| |||||| || ||||| ||||| | |||||||| || || Sbjct 4288 AGAGTACGACCATCTTCCAATTGTTTACCAGCGAAAATCAATCTTTGTTGGTCTGGTGGG 4229 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | ||| || ||||| ||||||| ||||| | | | || ||||| || Sbjct 4228 ATACCTTCTTTGTCTTGAATTTTTGTTTTAACATTTTCAATATTATCTGAGCCCTCAACT 4169 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || | || || ||||| || || | || || |||||||||||||| Sbjct 4168 TCAAGAGTGATGGTCTTACCAGTTAATGTTTTAACAAAGATTTGCAT 4122 >seq52 Length=54870 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||| |||||||| ||||| || || ||| ||||| || ||||| ||||| Sbjct 46374 CCACCTCTTAATCTTAAAACCAAATGGAGAGTGGATTCCTTTTGGATGTTATAGTCAGAA 46315 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || ||| | || |||| |||||| || ||||| || | || ||||| || || || Sbjct 46314 AGAGTACGACCATCTTCCAATTGTTTACCAGCGAAAATAAGACGTTGTTGATCTGGTGGG 46255 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | ||| || || || || || || || | | | | | || | || || ||| Sbjct 46254 ATACCTTCTTTATCTTGGATCTTGGCTTTGACGTTCTCAATGTTATCACTGCCTTCAACC 46195 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| |||||| || || || || | ||| || |||||||||||||| Sbjct 46194 TCCAAGGTAATTGTTTTACCAGTTAAAGTTTTAACAAAGATTTGCAT 46148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395060220600331