Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20intermedium_20[genbank_20GCA_5F000277465.1_202012- 07-10] 3,111 sequences; 30,529,520 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq316 138 1e-27 >seq316 Length=22015 Score = 138 bits (152), Expect = 1e-27 Identities = 347/520 (67%), Gaps = 17/520 (3%) Strand=Plus/Minus Query 13936 TTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCCATAAAATCAAATGGATTTGT 13995 ||| || ||||| | ||| | || | || || ||||||| | || || ||||||| Sbjct 21052 TTCGAAAAAGTTTGATTTTCTTTGTAAAGAGATCATTTCCATCCATTCGAAAGGATTTGA 20993 Query 13996 TGACATAAACACTTTATCACAACCTAGTTCTAATAGTAATCTATC--CGCAATGAACTCA 14053 || | || | || | | |||||| | | ||| | ||| ||||| |||||| Sbjct 20992 AGAGTTGAAAATCTTTTTATAACCTAAAGAGACCACTAAACGATCAGCGCAA--AACTCA 20935 Query 14054 ATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATATTGGTT 14113 || ||||| |||||| || | |||||||| |||| | || || | | || Sbjct 20934 ATGTATTGTGACATTGAACGTGAGTTCATACCGATTAAATCCACTGGTAATGAATCACAA 20875 Query 14114 AAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAATCGTAATAATTTCATTAGAA 14173 | || |||||||| || || || || ||||| || | ||| |||| || || Sbjct 20874 ATGAACTCTTTTTCACAAGCAACGGCATCCTTTATCATTGTTTCAATGATTT--TTGGAT 20817 Query 14174 GGAGGATATT-TTAGATGTTT---AAAAATTAAACACGCAAAATCACAATGAAGGCCCTC 14229 | || || || | |||| | | | | ||| |||||||||||||| | || || Sbjct 20816 CCA--ATTTTCTTTGTAGTTTCGTATAGAGAAGACAAGCAAAATCACAATGTAAACCTTC 20759 Query 14230 ATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAA 14289 ||| | ||| | ||| |||||||||||||| |||||||| || |||| ||||| || Sbjct 20758 ATCACGTGAAATCAATTCATTTGAAAATGTTAAACCTGGCATTAAACCTCTCTTTTTCAA 20699 Query 14290 CCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTAT 14349 |||||| |||| | || || || ||||| ||||||||||| ||||| || | Sbjct 20698 CCAAAAAATTGAACAAAAACTACCACTGAAAAATATACCCTCAACTGCTGCAAATGCAAC 20639 Query 14350 TAATCGTTCTCCAAACGATGCTTTTTTGTTCGAT-ATCCATTTTCTAGCCCATTCAGAtt 14408 || |||||| |||| || ||| || | |||||| || |||||||| | | Sbjct 20638 CAAACGTTCTGCAAATGA----ATTTGAATCATTAATCCATCTTAATGCCCATTCTGCCT 20583 Query 14409 tttttttAATAAAATCCATTGTTTCAATAGCATTAAATAA 14448 | ||||||| | | ||||||||||| ||||||||||| Sbjct 20582 TCTTTTTAACACATGGAATTGTTTCAATTGCATTAAATAA 20543 Score = 118 bits (130), Expect = 1e-21 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 14495 CTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCT 14554 ||||| ||||||| ||||| ||||| || || || ||||||||||| |||||||| ||| Sbjct 20397 CTATAGGTTTCAGAATGTATATTTTCAATTGCAATTTGAAAACCATAGAAACATCTTGCT 20338 Query 14555 TCTGACCATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCA 14614 |||| |||||| || || |||||| || | |||||||||||| ||||||||| Sbjct 20337 TCTGGAATTTGTACTTCAGACATAAATCTAGTTGCAAGATTTTCATTAACAATACCATCA 20278 Query 14615 CTAGCTGCAAAAAATGCCAA 14634 || |||||||||||||| Sbjct 20277 GATGCAGCAAAAAATGCCAA 20258 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/133 (75%), Gaps = 2/133 (2%) Strand=Plus/Minus Query 14686 TAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACAGCTTTTTTATA 14745 |||| | ||| |||||| | ||| ||| | |||| ||| |||| ||||||||||| Sbjct 20114 TAAAACTTTACCAAGATCGATTTCTTCAGCCACCCAATGACTTGCAAGGGCTTTTTTATA 20055 Query 14746 CATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAATCT-TGAAGATGTTTCTT 14804 |||| ||| || |||| |||| || ||||| | ||||||||| | || |||||| Sbjct 20054 CATTCTCCAGATATCTTGATATTTAATTGGAAATAATACAAATCTATCTTTAT-TTTCTT 19996 Query 14805 TAAGAATTGGTTC 14817 ||||||||||||| Sbjct 19995 TAAGAATTGGTTC 19983 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482326842785480