Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20intermedium_20[genbank_20GCA_5F000277465.1_202012- 07-10] 3,111 sequences; 30,529,520 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq268 120 2e-22 seq1461 98.7 8e-16 seq64 95.1 9e-15 seq356 93.3 3e-14 seq140 89.7 4e-13 seq52 89.7 4e-13 >seq268 Length=24546 Score = 120 bits (132), Expect = 2e-22 Identities = 170/235 (72%), Gaps = 8/235 (3%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || ||||| | || | |||||||||||||| |||||||| ||||| || | Sbjct 17379 CCACCACGAAGTCTTAAAACTAAATGAAGTGTTGATTCCTTTTGAATATTGTAATCTGAT 17438 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || || ||||||||||||||| || ||| |||| | |||||||||||| || Sbjct 17439 AAAGTACGACCATCTTCCAATTGTTTACCAGCAAAGATTAATCTTTGTTGATCTGGAGGA 17498 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTC---ACCGGGCTC 18274 | |||||||||| ||||| |||| || || | | ||| | | || ||| || Sbjct 17499 ATTCCTTCCTTATTTTGAATTT-TTGCTTTTACATTTTCAATATTATCTGAACC---TTC 17554 Query 18275 GGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTT 18329 ||||| || ||| |||| || || || ||||| |||||||||||||||||| Sbjct 17555 AACTTCAAGAGTTATGGTTTTTCCAGTTAAAGTTTTAACAAAAATTTGCATTTTT 17609 >seq1461 Length=5937 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || | || ||||||||||| |||||| || ||||||||||| || ||||| |||| Sbjct 4120 CCACCTCTTAATCTAAGTACCAAGTGAAGAGTGGATTCTTTTTGGATATTGTAATCGGAT 4061 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| || |||||| |||||||| || || | || || | ||||||||| || Sbjct 4060 AATGTACGACCATCTTCTAATTGTTTACCGGCGAAAATGAGACGTTGTTGATCTGGTGGG 4001 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||||||||||| ||| | | ||| || | ||| |||||| || | Sbjct 4000 ATACCTTCCTTATCTTGAATCTTTGTCTTTACATTCTCAATGTTGTCACTACCTTCAACT 3941 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | || || |||| || || | ||||| ||||| |||||||| Sbjct 3940 TCGAGAGTAATAGTTTTACCAGTAAGGGTTTTAACAAAGATTTGCAT 3894 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || | || |||||| || | || || || ||||| |||||||||||||| || | Sbjct 4348 CCACCTCTTAATCTAAGGACTAAATGGAGGGTGGATTCCTTTTGAATGTTGTAATCAGAG 4289 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || || ||||||||||||||| || || | || | ||||||||| || || Sbjct 4288 AGAGTACGACCATCTTCCAATTGTTTACCAGCGAAAATCAATCTTTGTTGGTCTGGTGGG 4229 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||||| || || ||||| | || || | | ||| | | || | ||| | Sbjct 4228 ATACCTTCTTTGTCTTGAATTTTTGTTTTAACATTTTCAATATTATCTGAGCCCTCAACT 4169 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||| |||||| | || || || |||||||| ||||| |||||||| Sbjct 4168 TCAAGAGTGATGGTCTTACCAGTTAATGTTTTAACAAAGATTTGCAT 4122 Score = 87.8 bits (96), Expect = 1e-12 Identities = 161/233 (69%), Gaps = 10/233 (4%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || | || ||| ||||| | || || || ||||| |||||||||||||| || | Sbjct 3664 CCACCTCTTAATCTGAGTACTAAATGGAGAGTGGATTCCTTTTGAATGTTGTAATCAGAG 3605 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || || ||||||||||||||| || || | ||||| | |||||| || || Sbjct 3604 AGAGTACGACCATCTTCCAATTGTTTACCAGCGAAAATAAGACGTTGTTGGTCTGGTGGG 3545 Query 18219 ACGCCTTCCTTATCGGCAATTT--GTTGCTTGACCTGTGCAACAGTGTC---ACCGGGCT 18273 | ||||||||||| ||||| ||| || || | | ||| | |||| ||| | Sbjct 3544 ATACCTTCCTTATCTTGAATTTTGGTT--TTTACATTTTCAATATTGTCGGAACC---TT 3490 Query 18274 CGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 | ||| | || || |||| || || | ||||| ||||||||||||||| Sbjct 3489 CTACTTCGAGAGTAATTGTTTTTCCAGTAAGAGTTTTAACAAAAATTTGCATT 3437 >seq64 Length=50952 Score = 95.1 bits (104), Expect = 9e-15 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 ||||| |||||||||||||||||||| ||||| | | || || |||||| |||||| Sbjct 24308 TGAAGAGTTGATTCTTTTTGAATGTTATAGTCAGAGAGAGTACGACCATCTTCTAATTGT 24367 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242 || || ||| |||| || | ||||||||| || | ||||| ||||| ||||| | Sbjct 24368 TTACCAGCAAAGATGAGACGTTGTTGATCTGGTGGAATACCTTCTTTATCTTGAATTT-T 24426 Query 18243 TGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGT 18301 || || || | | ||| | |||| || ||| | || || |||| || || Sbjct 24427 GGCTTTTACATTTTCAATGTTATCACTACCTTCAACTTCCAAAGTAATTGTTTTACCAGT 24486 Query 18302 CAATGTTTTTACAAAAATTTGCAT 18325 || ||||| |||||||||||||| Sbjct 24487 TAAAGTTTTAACAAAAATTTGCAT 24510 >seq356 Length=19801 Score = 93.3 bits (102), Expect = 3e-14 Identities = 168/243 (69%), Gaps = 2/243 (1%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || | || |||||| || | ||| || || ||||||||||||||||| || || | Sbjct 11587 CCACCTCTTAATCTAAGAACTAAGTGGAGAGTGGATTCTTTTTGAATGTTATAATCTGAT 11646 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || || |||||| |||||||| || || | || | ||||||||| || || Sbjct 11647 AAGGTACGACCATCTTCTAATTGTTTACCAGCGAAAATTAATCTTTGTTGGTCTGGTGGA 11706 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||||| ||||| ||||| | || || || | | ||| | ||| || Sbjct 11707 ATACCTTCTTTATCTTGAATTT-TAGCTTTAACATTTTCAATGTTATCAGAACCTTCAAC 11765 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTTAAACTCTT 18337 ||| | |||||| |||| || || | ||||| |||||||||||||| |||||| || Sbjct 11766 TTCTAAAGTGATGGTTTTACCTGTAAGAGTTTTAACAAAAATTTGCATATTTAAAAAATT 11825 Query 18338 ATA 18340 ||| Sbjct 11826 ATA 11828 >seq140 Length=35707 Score = 89.7 bits (98), Expect = 4e-13 Identities = 165/238 (69%), Gaps = 3/238 (1%) Strand=Plus/Plus Query 18089 TTTTTGTTATCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTT 18148 |||| |||| || || | || |||||| || | || || || ||||| ||||||||||| Sbjct 25085 TTTTAGTTA-CCACCTCTTAATCTAAGAACTAAATGGAGAGTGGATTCCTTTTGAATGTT 25143 Query 18149 GTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTG 18208 || || | | || || |||||| |||||||| || ||| ||||||| | |||||| Sbjct 25144 ATAATCAGAAAGAGTACGACCATCTTCTAATTGTTTACCGGCAAAGATAAGACGTTGTTG 25203 Query 18209 ATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCAC 18267 || || | ||||| || || |||| | || ||||| | | ||| |||||| Sbjct 25204 GTCTGGTGGGATACCTTCTTTGTCTTGGATTT-TGGCTTTGACATTTTCAATGTTGTCAC 25262 Query 18268 CGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || ||||| || || |||| || || || ||||| ||||| |||||||| Sbjct 25263 TACCTTCAACTTCAAGTGTAATTGTTTTACCAGTTAAAGTTTTAACAAAGATTTGCAT 25320 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || | || |||||| || | ||||| || ||||||||||| |||||||| || | Sbjct 26006 CCACCTCTTAATCTAAGAACTAAATGAAGAGTGGATTCTTTTTGGATGTTGTAATCAGAA 26065 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || || |||||| |||||||| || || | || | ||||||||| || || Sbjct 26066 AGAGTACGACCATCTTCTAATTGTTTACCAGCGAAAATTAATCTTTGTTGGTCTGGTGGA 26125 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||||| || || |||| | || || || | | | | |||||| | || Sbjct 26126 ATACCTTCTTTGTCTTGGATTT-TAGCTTTTACGTTCTCGATATTGTCACTGCCTTCAAC 26184 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 ||| | |||||| |||| || || | ||||| ||||||||||||||| Sbjct 26185 TTCGAGAGTGATGGTTTTACCAGTAAGAGTTTTAACAAAAATTTGCATT 26233 >seq52 Length=54870 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || | || |||||| || | ||| || || ||||||||||| ||||| ||||||| Sbjct 46146 CCACCTCTTAATCTAAGAACTAAGTGGAGAGTGGATTCTTTTTGGATGTTATAGTCGGAG 46087 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || || |||||| |||||||| || || | ||||| | ||||||||| || Sbjct 46086 AGAGTACGACCATCTTCTAATTGTTTACCAGCGAAAATAAGACGTTGTTGATCTGGTGGG 46027 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||||| ||||| ||| | | || ||||| | ||| | |||| || Sbjct 46026 ATACCTTCTTTATCTTGAATCT-TGGCTTTGACGTTCTCAATGTTATCACTACCTTCAAC 45968 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| | || || |||| || || || ||||| |||||||||||||| Sbjct 45967 TTCCAATGTAATTGTTTTACCAGTTAAGGTTTTAACAAAAATTTGCAT 45920 Score = 82.4 bits (90), Expect = 6e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || | || ||| | |||| || || || ||||||||||| || || || || | Sbjct 45462 CCACCTCTTAATCTTAAAACCAAATGGAGAGTGGATTCTTTTTGGATATTATAATCAGAG 45403 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || || ||||||||||||||| || || | || || | |||||| || || Sbjct 45402 AGAGTACGACCATCTTCCAATTGTTTACCAGCGAAAATGAGACGTTGTTGGTCTGGTGGA 45343 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||||| ||||| ||||| | || || || | | ||| | |||| || Sbjct 45342 ATACCTTCTTTATCTTGAATTT-TAGCTTTTACATTTTCAATGTTATCACTACCTTCAAC 45284 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 ||| | ||| ||| |||| || || |||||||| ||||||||||||||| Sbjct 45283 TTCTAAGGTAATGGTTTTACCAGTTAATGTTTTAACAAAAATTTGCATT 45235 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379329617053695