Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20intermedium_20[genbank_20GCA_5F000277465.1_202012- 07-10] 3,111 sequences; 30,529,520 total letters Query= NC_003094.2 Length=130759 Score E Sequences producing significant alignments: (Bits) Value seq52 100 2e-16 seq356 82.4 6e-11 seq268 82.4 6e-11 >seq52 Length=54870 Score = 100 bits (110), Expect = 2e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 ||||| || ||||||||||||||||| || ||||| || ||| | || || ||| ||| Sbjct 45692 ATGCAAATTTTTGTTAAAACCTTAACTGGTAAAACCATTACCTTAGAAGTTGAAGGTAGC 45751 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 || | | |||| ||| || | |||||| | |||||||| | || ||||| Sbjct 45752 GATAACATTGAAAATGTAAAAGCCAAAATTCAAGATAAAGAAGGTATCCCACCAGACCAA 45811 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011 ||| | ||||| | || || || ||| | |||||| ||| | ||||||| | Sbjct 45812 CAAAGATTAATTTTCGCTGGTAAGCAATTAGAAGATGGTCGTACTCTCTCTGATTACAAC 45871 Query 25012 ATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATT 25049 || || |||||| |||| || |||||||| ||| |||| Sbjct 45872 ATCCAAAAAGAGTCCACTCTCCATTTAGTTTTAAGATT 45909 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 ||||| || ||||||||||||||||| || ||||| || ||| | || || ||| | Sbjct 45464 ATGCAAATCTTTGTTAAAACCTTAACTGGTAAAACAATCACCTTAGAGGTTGAAGGTTCC 45523 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 || | | | |||| ||| || | || || | |||||||| | || ||||| Sbjct 45524 GATAATATCGAAAATGTAAAAGCCAAGATCCAAGATAAAGAAGGTATCCCACCAGACCAA 45583 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011 |||||| | || | || || |||||| | |||||| ||| | |||||||| Sbjct 45584 CAACGTCTTATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCCGATTACAAT 45643 Query 25012 ATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATT 25049 || || ||||| |||| || |||||||| ||| |||| Sbjct 45644 ATCCAAAAAGAATCCACTCTCCATTTAGTTTTAAGATT 45681 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/231 (68%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 24819 AAAAGTTAACATCATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGA 24878 |||| || ||| ||||| || ||||||||||| ||||| || ||||| || ||| | || Sbjct 45225 AAAAATTTACA--ATGCAAATTTTTGTTAAAACATTAACTGGTAAAACCATTACCTTAGA 45282 Query 24879 TGTCGAATCGAGCGACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGT 24938 || ||| || || | | |||| ||| || | |||||| | |||||||| | Sbjct 45283 AGTTGAAGGTAGTGATAACATTGAAAATGTAAAAGCTAAAATTCAAGATAAAGAAGGTAT 45342 Query 24939 ACCGGTTGACCAGCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTAT 24998 || ||||| |||||| | || | || || |||||| |||||||| ||| | Sbjct 45343 TCCACCAGACCAACAACGTCTCATTTTCGCTGGTAAACAATTGGAAGATGGTCGTACTCT 45402 Query 24999 GAACGATTACAGCATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATT 25049 ||||| | || || ||||| |||| || ||||| || ||| |||| Sbjct 45403 CTCTGATTATAATATCCAAAAAGAATCCACTCTCCATTTGGTTTTAAGATT 45453 >seq356 Length=19801 Score = 82.4 bits (90), Expect = 6e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 ||||| || ||||||||||| | || || ||||| || || | || || ||| ||| Sbjct 11585 ATGCAAATTTTTGTTAAAACTCTTACAGGTAAAACAATTACATTGGAAGTTGAAGGTAGC 11526 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 || | | |||| |||||| | ||| ||| | |||||||| | || || || Sbjct 11525 GATAACATTGAAAATGTTAAAGCAAAGATTCAAGATAAAGAAGGTATTCCACCAGATCAA 11466 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011 ||| | ||||| | || || |||||| | |||||| ||| | ||||||| Sbjct 11465 CAAAGATTAATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGATTACAAT 11406 Query 25012 ATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATT 25049 || || ||||| |||| ||||||||||| ||| |||| Sbjct 11405 ATCCAAAAAGAATCCACTCTTCATTTAGTTTTAAGATT 11368 >seq268 Length=24546 Score = 82.4 bits (90), Expect = 6e-11 Identities = 160/236 (68%), Gaps = 8/236 (3%) Strand=Plus/Minus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 ||||| || ||||||||||| ||||| || ||||| ||||| | || || ||| Sbjct 17605 ATGCAAATTTTTGTTAAAACTTTAACTGGAAAAACCATAACTCTTGAAGTTGAAGGTTCA 17546 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAA----GAAGGCGTACCGGTTGA 24947 || | | | |||| ||| || | ||||||| ||||| ||||| | || || Sbjct 17545 GATAATATTGAAAATGTAAAAGCAAAAATT----CAAAATAAGGAAGGAATTCCTCCAGA 17490 Query 24948 CCAGCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTA 25007 || ||| | ||||| | ||| || |||||| |||||||| ||| | ||||| Sbjct 17489 TCAACAAAGATTAATCTTTGCTGGTAAACAATTGGAAGATGGTCGTACTTTATCAGATTA 17430 Query 25008 CAGCATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGGTCAAT 25063 || || || || || | || ||||||||||| ||| || | || || |||| || Sbjct 17429 CAATATTCAAAAGGAATCAACACTTCATTTAGTTTTAAGACTTCGTGGTGGTCTAT 17374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418288139873120