Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20intermedium_20[genbank_20GCA_5F000277465.1_202012- 07-10] 3,111 sequences; 30,529,520 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq2826 154 2e-32 seq316 107 2e-18 >seq2826 Length=2534 Score = 154 bits (170), Expect = 2e-32 Identities = 545/839 (65%), Gaps = 33/839 (4%) Strand=Plus/Plus Query 62988 TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTA 63047 ||||| || || ||||||||||||||||||| | || || || | |||||||||||| Sbjct 1245 TATTGAATGATTTCAGTGCAAAGATTACTACTACTAATGGTACCGAGATTTTGTTGATTG 1304 Query 63048 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGAT 63107 || || || || |||||||| | |||||||| ||||||||||||| || ||| Sbjct 1305 GATTTGGAATTGCAAGCGTCCTTATACAAGATGAATGGTGTACCAGTTTCAACTTGTGAT 1364 Query 63108 TCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGAT-TTGTA---TCTCCTTT- 63162 || ||||| || ||| | || | || || |||| | | ||| ||| | | Sbjct 1365 TCCATAATGGCGAACCAAAGTTCTTGTGCTTTGATTACACGTCTTGCGAGGTCTGGTGTT 1424 Query 63163 --CTCTTTCGTA---TAGAGTATACAATCGTTC----GAACTCGTCTCCCCAAACATTGT 63213 ||| | | | ||||| || || |||| ||| || || | | | Sbjct 1425 GCCTCATACTTTAAGTAGAGGGCACGAT-GTTCTTGGGAATGAGTTTCAGCGA-----GA 1478 Query 63214 CCAATCTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTT 63273 || || ||| | ||||| | | ||||| || || | | | || || | Sbjct 1479 CCG-----GGTGCTTCGTTTGGACAAAAGAGTGACCAATCACCATTTTGTTCGACACGCT 1533 Query 63274 TCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTTGTTCTATGTTCCTCG 63332 |||||||| |||| || ||| || || ||| ||||||||||| | ||| ||||| Sbjct 1534 CCATAAAGATATCACTAACCCAGAGGGC-ATAGAATAGATCTCTAGCTCTCATCTCCTCC 1592 Query 63333 TTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAG 63392 || || || || || || ||||||| ||| | | | ||| | |||||| || |||||| Sbjct 1593 TTGCCAGTGTTTTTCTTGAGATCGATAAACTCAAAGACATCGGCATGCCATGGCTCCAAG 1652 Query 63393 TATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTA 63452 |||| ||| | | || | |||| || || ||||| | ||| | |||||| | | Sbjct 1653 TATACGGCAAAGGCACCCTTTCTTTTGCCACCACCTTGATCGACGTAACGAGCGGTATCA 1712 Query 63453 TTATAAACTCTCAACATTGGAATAATACCGTTTGATA-TACCATTGGTACCGGAGATATA 63511 || |||| | | |||||| | | ||| ||| || | ||||||||||| ||||| Sbjct 1713 TTGAAAACACGAAGCATTGGTACCAAACC-ATTGCTAGTGCCATTGGTACCACGAATATA 1771 Query 63512 GCCTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGAT 63571 | | | ||||||||| ||| | | | ||| || || || || | || || || Sbjct 1772 ACTTTGAGCGGCACGAATTTTATGTACGGCAACACCAATACCACCGGCACTCTTTGAAAT 1831 Query 63572 TAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAG 63631 ||||| ||| |||| || ||||||||||| || || || ||| || |||| | || Sbjct 1832 CAATGCACATTGTTTCAAGGTGTCATAGATACCATCGATTGAATCCTCCTTCATTTGAAC 1891 Query 63632 TAGAAAACAGCTAGACATT--TGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAA 63689 | ||||| ||||||| |||||| || || || || || ||||| || || | Sbjct 1892 CAAGAAACATGAAGACATTTGTGGTGA--AGGTGTACCAGCGTTGAATAATGTTGGTGTG 1949 Query 63690 GCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCC 63749 || || || || ||| || || || | || || | || || || || || ||| Sbjct 1950 GCATGTGTGAATAGTTTCTCCGATAGACGTCGATAGGTGTTGATCGCAGACTCAATGTCC 2009 Query 63750 CATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTT 63808 ||| || || | | |||||||| ||||| || || || | || |||||||| Sbjct 2010 TCGCCATGGATACCAATGGAAACACGCATCAACATATGTTGTGGACGCTCTACAATTTT 2068 >seq316 Length=22015 Score = 107 bits (118), Expect = 2e-18 Identities = 114/148 (77%), Gaps = 2/148 (1%) Strand=Plus/Minus Query 33870 CTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCC 33929 ||||| |||| ||||| || |||||||| || || ||||| || ||||||||||| || Sbjct 20397 CTATAGGTTTCAGAATGTATATTTTCAATTGCAATTTGAAAACCATAGAAACATCTTGCT 20338 Query 33930 TCGGTAATCTGCACTTCTGTACA-AAATCGTTCTGCTAAATTTTCATTCACTATTCCATC 33988 || | ||| || ||||| | ||| ||||| ||| | ||||||||| || || ||||| Sbjct 20337 TCTGGAATTTGTACTTCAG-ACATAAATCTAGTTGCAAGATTTTCATTAACAATACCATC 20279 Query 33989 ACTGGCTGCAAAAAACGCCAATACATGT 34016 | || |||||||| ||||| |||||| Sbjct 20278 AGATGCAGCAAAAAATGCCAAAACATGT 20251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629793107968080