Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20intermedium_20[genbank_20GCA_5F000277465.1_202012- 07-10] 3,111 sequences; 30,529,520 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq316 141 9e-29 seq2826 116 3e-21 >seq316 Length=22015 Score = 141 bits (156), Expect = 9e-29 Identities = 212/296 (72%), Gaps = 4/296 (1%) Strand=Plus/Minus Query 11629 ACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAA 11688 ||| ||||||||||||||||||||||| || | || | |||||| ||||||||||| Sbjct 20785 ACAAGCAAAATCACAATGTAAACCTTCATCACGTGAAATCAATTCATTTGAAAATGTTAA 20726 Query 11689 TCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAA 11748 || ||||| || |||| ||||| | |||||| || | | ||| |||| || || Sbjct 20725 ACCTGGCATTAAACCTCTCTTTTTCAACCAAAAAATTGAACAAAAACTACCACTGAAAAA 20666 Query 11749 TATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATAT-ACCTTGTTGCTAGATA 11807 ||| ||||| || ||||||||||| || | | |||| || || | ||| | | | Sbjct 20665 TATACCCTCAACTGCTGCAAATGCAACCAAACGTTCTGCAAATGAATTTGAATC-ATTAA 20607 Query 11808 TCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAA 11867 ||||| || ||||| || || |||||||| || ||| |||||||| || || |||| Sbjct 20606 TCCATCTTAATGCCCATTCTGCCTTCTTTTTAACACATGGAATTGTTTCAATTGCATTAA 20547 Query 11868 ATAAATGCATTTTTTCTAT-ATTATCTCTTACATATGTATCTATTAATAAACTATA 11922 || ||| || ||| | | |||||| | | ||| || || ||||| | ||| || Sbjct 20546 AT-AATTTATCTTTAGTTTGTTTATCTTTAATATAAGTTTCAATTAAAAGACTTTA 20492 Score = 109 bits (120), Expect = 5e-19 Identities = 172/239 (72%), Gaps = 13/239 (5%) Strand=Plus/Minus Query 11880 TTTCTATAT-TATCTCT-TACATATGTATCTATT-AATAAACT-----ATACATTTCTGA 11931 ||| ||||| ||| | | || |||| ||| ||| |||||||| ||| |||| || Sbjct 20443 TTTGTATATATATATATATATATATATATAAATTTAATAAACTTACCTATAGGTTTCAGA 20384 Query 11932 ATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTAC 11991 ||| |||||||| || || |||||||| ||||||||||||| ||| |||| | ||||| Sbjct 20383 ATGTATATTTTCAATTGCAATTTGAAAACCATAGAAACATCTTGCTTCTGGAATTTGTAC 20324 Query 11992 ATCC-ACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATGCAAAAA 12050 || ||||||| ||| || | ||| ||||| |||||||||||| | ||||||| Sbjct 20323 TTCAGACATAAA-TCTAGTTGCAAGATTTTCATTAACAATACCATCAGATGCAGCAAAAA 20265 Query 12051 ATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTA---TCCCAATCA 12106 |||| | | |||| || |||| ||| | | |||| |||| ||||||||| Sbjct 20264 ATGCCAAAACATGTGAGATGAAGTGACGTTCATTATCTGTTAGTTTATATTCCCAATCA 20206 >seq2826 Length=2534 Score = 116 bits (128), Expect = 3e-21 Identities = 380/585 (65%), Gaps = 4/585 (1%) Strand=Plus/Plus Query 37977 TTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCCATAAATAAATC 38036 |||| |||||| | || ||||| || ||| || ||| || || |||||||| | ||| Sbjct 1487 TTCGTTTGGACAAAAGAGTGACCAATCACCATTTTGTTCGACACGCTCCATAAAGATATC 1546 Query 38037 AGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATATTCTTCGTTCCCTACATTCTT 38096 | ||||| | ||| |||| |||| | | ||| || || || || || || Sbjct 1547 ACTAACCCAGAGGGCATAGAATAGATCTCTAGCTCTCATCTCCTCCTTGCCAGTGTT-TT 1605 Query 38097 TCTTAAGCTT-AGAAAATCGAATATATCAGCGTGCCATGGTTCTATATAAATCGACATTG 38155 |||| || | | ||| || || | ||| || |||||||| || | || | | | | Sbjct 1606 TCTTGAGATCGATAAACTCAAAGACATCGGCATGCCATGGCTCCAAGTATACGGCAAAGG 1665 Query 38156 CTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTATTATATATTCTTA 38215 | || |||||| |||| || |||| | || | | | || | ||| | | | | Sbjct 1666 CACCCTTTCTTTTGCCACCACCTTGATCGACGTAACGAGCGGTATCATTGAAAACACGAA 1725 Query 38216 ACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAGCTC 38275 ||| ||||| | |||||| |||| || |||| |||||| | || | Sbjct 1726 GCATTGGTACCAAACCATTGCTAGTGCCATTGGTACCACGAATATAACTTTGAGCGGCAC 1785 Query 38276 GTATATTACTTATCGACAAT-CCTATTCCACCTGCATGTTTTGATATTAAAGCGCATTGT 38334 | || ||| || || ||| || || ||||| ||| ||||| || || || |||||| Sbjct 1786 GAATTTTATGTA-CGGCAACACCAATACCACCGGCACTCTTTGAAATCAATGCACATTGT 1844 Query 38335 TTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTATTGGTAGTATAAAACAACTA 38394 || || || ||| | ||||| || || || ||||| ||| | | | ||||| | Sbjct 1845 TTCAAGGTGTCATAGATACCATCGATTGAATCCTCCTTCATTTGAACCAAGAAACATGAA 1904 Query 38395 GACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCAT 38454 |||||||| || | || || || ||||| |||||||| || | |||||| |||| | Sbjct 1905 GACATTTGTGGTGAAGGTGTACCAGCGTTGAATAATGTTGGTGTGGCATGTGTGAATAGT 1964 Query 38455 TTTTCCGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCT 38514 || ||||| | | ||| || | || || || || || |||| || ||||| Sbjct 1965 TTCTCCGATAGACGTCGATAGGTGTTGATCGCAGACTCAATGTCCTCGCCATGGATACCA 2024 Query 38515 AGAGATACCCTCATTAGCATATGTTGTGGTCTTTCTATTATTTTA 38559 | || || | ||| | |||||||||||| | |||| |||||| Sbjct 2025 ATGGAAACACGCATCAACATATGTTGTGGACGCTCTACAATTTTA 2069 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468506580241840