Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20intermedium_20[genbank_20GCA_5F000277465.1_202012- 07-10] 3,111 sequences; 30,529,520 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq2826 145 1e-29 seq316 114 2e-20 seq339 87.8 2e-12 >seq2826 Length=2534 Score = 145 bits (160), Expect = 1e-29 Identities = 441/672 (66%), Gaps = 11/672 (2%) Strand=Plus/Plus Query 65781 TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTA 65840 ||||| || || ||||||||||||||||||| | ||||| || | |||||||||||| Sbjct 1245 TATTGAATGATTTCAGTGCAAAGATTACTACTACTAATGGTACCGAGATTTTGTTGATTG 1304 Query 65841 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGAT 65900 || || || || |||||||| | |||||||| ||||||||||||| || ||| Sbjct 1305 GATTTGGAATTGCAAGCGTCCTTATACAAGATGAATGGTGTACCAGTTTCAACTTGTGAT 1364 Query 65901 TCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATA-GATTTG-TATCTCTTTTCTC 65958 || ||||| || ||| | || | || || |||| | | ||| | ||| | | Sbjct 1365 TCCATAATGGCGAACCAAAGTTCTTGTGCTTTGATTACACGTCTTGCGAGGTCTGGTGT- 1423 Query 65959 TTTCGTATAGTGTATACA-ATCGTTCGAACTCGTCTCCCCAAACATTGT---CCAATCCA 66014 | | ||| | || | | | ||| | ||| || | | | | | || Sbjct 1424 TGCCTCATACTTTAAGTAGAGGGCACGA--TGTTCTTGGGAATGAGTTTCAGCGAGACCG 1481 Query 66015 GGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAG 66074 || ||| | ||||| | | ||||| || || | | | || || | ||||||| Sbjct 1482 GGTGCTTCGTTTGGACAAAAGAGTGACCAATCACCATTTTGTTCGACACGCTCCATAAAG 1541 Query 66075 AGATCAGGAATCCAAAGAGCTATA-AATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGT 66133 | |||| || ||| || || ||| |||| |||||| | ||| ||||| || || || Sbjct 1542 ATATCACTAACCCAGAGGGC-ATAGAATAGATCTCTAGCTCTCATCTCCTCCTTGCCAGT 1600 Query 66134 ATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGC 66193 || || || ||||||| ||| | | | ||| |||||| || |||||||||| ||| Sbjct 1601 GTTTTTCTTGAGATCGATAAACTCAAAGACATCGGCATGCCATGGCTCCAAGTATACGGC 1660 Query 66194 CATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAAC 66253 | | || | |||| || || ||||| | ||| | |||||| | ||| |||| Sbjct 1661 AAAGGCACCCTTTCTTTTGCCACCACCTTGATCGACGTAACGAGCGGTATCATTGAAAAC 1720 Query 66254 TCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACT 66313 | | |||||| | | ||||||| || |||||||| || ||||| ||| | Sbjct 1721 ACGAAGCATTGGTACCAAACCATTGCTAGTGCCATTGGTACCACGAATATAACTTTGAGC 1780 Query 66314 TGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCA 66373 |||||||| ||| | | | ||| || || || || | || || || ||||| || Sbjct 1781 GGCACGAATTTTATGTACGGCAACACCAATACCACCGGCACTCTTTGAAATCAATGCACA 1840 Query 66374 TCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACA 66433 | |||| || || |||||||| || || || ||| ||| |||| | || | ||||| Sbjct 1841 TTGTTTCAAGGTGTCATAGATACCATCGATTGAATCCTCCTTCATTTGAACCAAGAAACA 1900 Query 66434 GCTAGACATTTG 66445 ||||||||| Sbjct 1901 TGAAGACATTTG 1912 >seq316 Length=22015 Score = 114 bits (126), Expect = 2e-20 Identities = 136/182 (75%), Gaps = 2/182 (1%) Strand=Plus/Minus Query 36446 CTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCC 36505 ||||| |||| ||||| || |||||||| || |||||||| || ||||||||||| || Sbjct 20397 CTATAGGTTTCAGAATGTATATTTTCAATTGCAATTTGAAAACCATAGAAACATCTTGCT 20338 Query 36506 TCGGTAATCTGTACTTCTGTACA-AAATCGTTCTGCTAAATTTTCATTCACTATTCCGTC 36564 || | ||| |||||||| | ||| ||||| ||| | ||||||||| || || || || Sbjct 20337 TCTGGAATTTGTACTTCAG-ACATAAATCTAGTTGCAAGATTTTCATTAACAATACCATC 20279 Query 36565 ACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTT 36624 | || |||||||| ||||| |||||| || || | ||| || ||||||||| Sbjct 20278 AGATGCAGCAAAAAATGCCAAAACATGTGAGATGAAGTGACGTTCATTATCTGTTAGTTT 20219 Query 36625 AT 36626 || Sbjct 20218 AT 20217 Score = 84.2 bits (92), Expect = 3e-11 Identities = 88/115 (77%), Gaps = 3/115 (3%) Strand=Plus/Minus Query 36686 GCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTT 36745 || ||||||||||| ||||||| || ||||||| ||||||||| | |||||||||| | Sbjct 20065 GCTTTTTTATACATTCTCCAGATATCTTGATATTTAATTGGAAATAATACAAATCTATCT 20006 Query 36746 TGATTTTTTGCAAGGATTGGTTCCATAACTAAATTAACAATAGTAGTAATTTTTT 36800 | ||||| | ||| |||||||| ||| ||| || | | || |||||| || Sbjct 20005 TTATTTTCTTTAAGAATTGGTTC---AACAAAAGTATCTTTTTTATTAATTTCTT 19954 >seq339 Length=20847 Score = 87.8 bits (96), Expect = 2e-12 Identities = 179/264 (68%), Gaps = 4/264 (2%) Strand=Plus/Plus Query 83796 GTGATAGGTATTGATGAAGGACAGTTCTTTCCAGACATTGTTGAATTCTGTGAGCGTATG 83855 || || |||||||||||||| || || || |||||| |||| |||| |||| | | Sbjct 16065 GTAATTGGTATTGATGAAGGTCAATTTTTCCCAGACGTTGTACAATTTAGTGAAGATTTA 16124 Query 83856 GCAAACGAAGGAAAAATAGTTATAGTAGCAGCACTCGATGGGACATTTCAACGTAAACCG 83915 ||||| |||| |||| ||||| | || ||||||||||| ||||| ||| | ||||| Sbjct 16125 GCAAATCAAGGTAAAACCGTTATTATTGCCGCACTCGATGGTACATTCCAAAGAAAACCA 16184 Query 83916 TTTAATAATATCTTGGA--TATTATTCCATTATCTGAAATGGTGGTAAAACTAACTGCAG 83973 || | | || | || || ||| || ||||| | ||| |||| || | Sbjct 16185 TTCCAATCTGTCATTGACTTAGTAT--CAAAGGCTGAATATATTACAAAGTTAACCGCCG 16242 Query 83974 TGTGTATGAAATGCTTTAAGGAGGCTTCCTTTTCTAAACGATTAGGTGCAGAAACCGAGA 84033 | |||||| ||||| || || ||| ||||||| || || | | || | ||| | Sbjct 16243 TTTGTATGGTATGCTACAATGAAGCTGCCTTTTCAAAGCGTATCGTTGAAAGTGACGACA 16302 Query 84034 TAGAAATAATAGGAGGTAATGGTA 84057 | ||| | || ||||||| || || Sbjct 16303 TTGAATTGATTGGAGGTATTGATA 16326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658147205305240