Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20intermedium_20[genbank_20GCA_5F000277465.1_202012- 07-10] 3,111 sequences; 30,529,520 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq64 95.1 1e-14 seq89 93.3 4e-14 seq140 87.8 2e-12 seq1461 86.0 6e-12 seq52 82.4 8e-11 >seq64 Length=50952 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| ||| | |||||||| |||| || || ||||||||||||||||| || Sbjct 24284 CCACCTCTTAATCTTAAAACTAAATGAAGAGTTGATTCTTTTTGAATGTTATAGTCAGAG 24343 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||||| | |||||||||||| |||| |||||||| ||||| || || Sbjct 24344 AGAGTACGACCATCTTCTAATTGTTTACCAGCAAAGATGAGACGTTGTTGATCTGGTGGA 24403 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || |||||||| || ||| |||| | ||||| | ||| | | || | || || Sbjct 24404 ATACCTTCTTTATC-TTGAATTTTGGCTTTTACATTTTCAATGTTATCACTACCTTCAAC 24462 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | || | || || || || || ||||| || || ||||||||| Sbjct 24463 TTCCAAAGTAATTGTTTTACCAGTTAAAGTTTTAACAAAAATTTGCATA 24511 >seq89 Length=43963 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| ||| | ||||||||||| | || || || ||||| |||||||||||| Sbjct 14336 CCACCTCTTAATCTTAAAACTAAGTGGAGGGTTGATTCCTTTTGGATGTTATAATCGGAT 14277 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||||| | |||||||| ||| |||| |||||||| ||||| || || Sbjct 14276 AAAGTACGACCATCTTCTAATTGTTTACCGGCAAAGATAAGACGTTGTTGATCTGGTGGG 14217 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||||||||| ||| | || | ||| | | ||| | |||| | || || Sbjct 14216 ATACCTTCTTTGTC-TTGAATCTTGGCTTTGACGTTTTCGATGTTGTCTGAACCTTCAAC 14158 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | || || || || || ||||| ||||| |||||||| Sbjct 14157 TTCGAGAGTGATGGTTTTACCAGTTAAGGTTTTAACGAAGATTTGCAT 14110 >seq140 Length=35707 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| ||| | | |||||| || | || || || ||||||||||||||||| Sbjct 25094 CCACCTCTTAATCTAAGAACTAAATGGAGAGTGGATTCCTTTTGAATGTTATAATCAGAA 25153 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||||| | |||||||| ||| |||| |||||||| || || || || Sbjct 25154 AGAGTACGACCATCTTCTAATTGTTTACCGGCAAAGATAAGACGTTGTTGGTCTGGTGGG 25213 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||||||||| |||||| ||| | | ||| | |||| | || || Sbjct 25214 ATACCTTCTTTGTCTTGGATTTTGGCTTTGACATTTTCAATGTTGTCACTACCTTCAACT 25273 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 |||| || | || || || || || ||||| || || ||||||||| Sbjct 25274 TCAAGTGTAATTGTTTTACCAGTTAAAGTTTTAACAAAGATTTGCATA 25321 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| ||| | | |||||| || | ||||| || ||||||||||||||||| Sbjct 25778 CCACCTCTTAATCTAAGAACTAAATGGAGAGTAGATTCCTTTTGAATGTTATAATCAGAA 25837 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||||| | |||||||| ||| |||| |||||||| || || || || Sbjct 25838 AGAGTACGACCATCTTCTAATTGTTTACCGGCAAAGATAAGACGTTGTTGGTCTGGTGGG 25897 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||||||||| |||||| ||| | | ||| | | |||| || || Sbjct 25898 ATACCTTCTTTGTCTTGGATTTTGGCTTTGACATTTTCAATGTTATCGGAACCTTCGACT 25957 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | || | || || || || | ||||| ||||| ||||||||| Sbjct 25958 TCTAATGTGATTGTTTTACCAGTGAGAGTTTTAACGAAGATTTGCATA 26005 >seq1461 Length=5937 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| ||| | | ||||| || | || || || ||||||||||| ||||| Sbjct 4348 CCACCTCTTAATCTAAGGACTAAATGGAGGGTGGATTCCTTTTGAATGTTGTAATCAGAG 4289 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||||| | ||||||||||| | |||| | ||| || || || || Sbjct 4288 AGAGTACGACCATCTTCCAATTGTTTACCAGCGAAAATCAATCTTTGTTGGTCTGGTGGG 4229 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||||||||| ||| ||||||||||| | | ||| | | || | | ||| || Sbjct 4228 ATACCTTCTTTGTC-TTGAATTTTTGTTTTAACATTTTCAATATTATCTGAGCCCTCAAC 4170 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 |||| || | ||||| || || || ||||| || || ||||||||| Sbjct 4169 TTCAAGAGTGATGGTCTTACCAGTTAATGTTTTAACAAAGATTTGCATA 4121 >seq52 Length=54870 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| ||| | |||||||| || | || || |||||||| || || |||||| Sbjct 45690 CCACCTCTTAATCTTAAAACTAAATGGAGAGTGGATTCTTTTTGGATATTGTAATCGGAG 45631 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||||| | ||||||||||| | || |||||||| || || || || Sbjct 45630 AGAGTACGACCATCTTCTAATTGTTTACCAGCGAAAATAAGACGTTGTTGGTCTGGTGGG 45571 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || |||||||| || ||| || ||||| | ||| | | |||| || ||| Sbjct 45570 ATACCTTCTTTATCTTGGATCTTGGCTTTTACATTTTCGATATTATCGGAACCTTCAACC 45511 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | ||| | || || || || || ||||| || || ||||||||| Sbjct 45510 TCTAAGGTGATTGTTTTACCAGTTAAGGTTTTAACAAAGATTTGCATA 45463 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496044709311200