Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20intermedium_20[genbank_20GCA_5F000277465.1_202012- 07-10] 3,111 sequences; 30,529,520 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq2826 187 4e-42 seq316 107 3e-18 >seq2826 Length=2534 Score = 187 bits (206), Expect = 4e-42 Identities = 1053/1659 (63%), Gaps = 68/1659 (4%) Strand=Plus/Plus Query 78718 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 78777 ||||||||||| | | | | || || ||||| ||||||||||| || || |||| | Sbjct 270 GTGAATTGAATTGCATCAGCAGCTGGACGAGTACGAAGATAGTACATACCAGTCTTTAAA 329 Query 78778 CCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 78837 || |||| || || ||||| || ||||||| | | | || || || || Sbjct 330 CCTTTCTTCCAAGAATAAAAGTGCATTGAGGTGAGTTTGGCAAAGGTTGGTTCAGCGATG 389 Query 78838 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 78897 | || | | |||||||||||| ||||| || || | || || ||||| | ||| Sbjct 390 AAAACGTTGAAACTTTGACTTTGATCAATGAAAGCACCACGATCAGCGGCCATATCAATG 449 Query 78898 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 78957 | || |||| |||||||||||| |||||||| | | || | || ||||||| | Sbjct 450 AGAGTTCTTTGACGAATTTCCCAAACGGTTTTATAGAGTTCTTTCAATTCATCTGGAATG 509 Query 78958 TT-----TGTATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCTTCAT 79012 || ||| | || || |||| |||| || || |||||| |||||| Sbjct 510 CCACCAATGGATT--GGATTGAACCACGTGCTGCAATGATTTGATTCTTCATCTCTGGTG 567 Query 79013 TCCATAATTTTCTCTCGGTTAAAA--CTCTAAGGAGATGCGGATTAACTACTTGAAATTC 79070 |||| ||| | | ||| | ||| || | || ||| || | ||| || Sbjct 568 TCCA-AATACCCAATTCCATAAGATCCTCCAACAAT-TGTTTATTGACGATAGTAAACTC 625 Query 79071 TCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGATTCATTATT 79130 |||| |||||| | ||| ||||||| || || |||||||| | |||| || || Sbjct 626 ACCAGCCAATACACGACGACTGTAAATGTTTGAAGTGTATGGTTCAAAGCATTCGTTGTT 685 Query 79131 TCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTATTTCTAAG 79190 || | |||||| |||||| || |||||||| ||||| | || | || | | Sbjct 686 ACCAAGGATTTGACTAGTTGAAGCGGTTGGCATTGGTGCAATTAAGAGGGAGTTACGTAA 745 Query 79191 ACCG----TATGATCTGATTTTATCTTTTAGAGATTCCCAATCCCAAAGATCAGACGGGA 79246 ||| ||| | ||| ||||||||||| | |||||| |||| | | || Sbjct 746 ACCACCTTTATTGAC-GATCTTATCTTTTAGGTCTGCCCAATTCCAACGTGAACTTGGAG 804 Query 79247 CAACATTCCAAAGATCATATTGTAGAATACCGTTACTAGCGTATGATCCTGTGTATGTTT 79306 || ||||| | ||| ||||| || ||||| || || ||| ||| | | | | Sbjct 805 TCACTTTCCACATATCGTATTGAAGGATACCTTTGGATGCTGGTGAGCCTTGGAAAGACT 864 Query 79307 CATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAATAAATGG 79366 |||| || || || | || |||||| | || || ||| || |||| |||| Sbjct 865 CATATGGACCATCACGTAGTGCCAATTCATGAGAGGCGGTCAAAGCTGCGAAATAGATGG 924 Query 79367 TTTCGAAAATCTTCTTATTGAGATCTTGTG-CTTCTAGGCTATCAAATGG-ATA---ATT 79421 |||| || | ||| | || | | | | | | |||||||| || ||| ||| Sbjct 925 TTTCAGCGATTTCAACATTTA-ATTTAGCGGCGGCAACACTATCAAAAGGCATACGCATT 983 Query 79422 TAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTT 79481 | |||| || | || ||||| ||||| | ||||||||| || || | |||||| Sbjct 984 T----GAATGAAAACATCGGCTAAACCTTGGATACCAATACCAATTGGACGATGTCTAAG 1039 Query 79482 ATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATT 79541 ||| ||| ||| ||| || | ||||||| | ||| ||| || || |||||||| Sbjct 1040 ATTTGAAGTTTTAGCCTCGACCACAGGATAAAAGTTACGATCAATGATAACGTTGAGATT 1099 Query 79542 CC---TGA----CT-----ATTAC---------TT--TGACCACA-TCCTTTAGTTTGAG 79577 ||| || ||| | || ||| || | ||||| ||| | Sbjct 1100 GACAGTGATCAACTTGGTGATTTCAAAGAGGAATTGATGATCAAACTCCTTCTCTTTTGG 1159 Query 79578 AAAATCAAATCGTCCATCTATT-ACAAAC--ATGTTCAACGCGACA--GATGCCAGATTA 79632 | | | || ||| || || || || || | | | | || || ||||| Sbjct 1160 ATCGGTTGAAC--CCGTCTTTTGACGAATGAATTTTGGAAGGGCAATTGAGGCGAGATTG 1217 Query 79633 CAAACGGCTACCTCATTAGCATCCGCATATTGTATTATTTCAGTGCAGAGGTTACTACAC 79692 ||||| || | |||| | | ||||| || ||||||||||| || ||||||| Sbjct 1218 CAAACTGCAATTTCATCTGGTGATGTGTATTGAATGATTTCAGTGCAAAGATTACTACTA 1277 Query 79693 TTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATG 79752 ||||||| || | |||||||||||| || || || || |||||||| | ||| Sbjct 1278 CTAATGGTACCGAGATTTTGTTGATTGGATTTGGAATTGCAAGCGTCCTTATACAAGATG 1337 Query 79753 AACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTT 79812 || || ||||||||||||| || ||||| ||||| || ||| | || | || || Sbjct 1338 AATGGTGTACCAGTTTCAACTTGTGATTCCATAATGGCGAACCAAAGTTCTTGTGCTTTG 1397 Query 79813 ATTATA-GACTTGT-ATCTCTTTTCTCTTTCGTATTGTGTATATA-ATCGTTCGAACTCG 79869 |||| | | |||| | ||| | | | | || | || || | | ||| | Sbjct 1398 ATTACACGTCTTGCGAGGTCTGGTGT-TGCCTCATACTTTAAGTAGAGGGCACGATGT-- 1454 Query 79870 TCTCCCCAAACA---TCGTCTAATCCAGGACATTCGTCAGGACACATCAACGACCACTCT 79926 ||| || | || | | || || ||||| ||||| | | ||||| || Sbjct 1455 TCTTGGGAATGAGTTTCAGCGAGACCGGGTGCTTCGTTTGGACAAAAGAGTGACCAATCA 1514 Query 79927 CCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATC 79985 |||| | | || || | |||||||| |||| || ||| || || ||| |||||||| Sbjct 1515 CCATTTTGTTCGACACGCTCCATAAAGATATCACTAACCCAGAGGGC-ATAGAATAGATC 1573 Query 79986 TCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATC 80045 ||| | ||| |||||| || || || || || || ||||||| ||| | | | ||| Sbjct 1574 TCTAGCTCTCATCTCCTCCTTGCCAGTGTTTTTCTTGAGATCGATAAACTCAAAGACATC 1633 Query 80046 AGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATC 80105 | |||||| || |||||||||| ||| | | ||| || |||| || || ||||| Sbjct 1634 GGCATGCCATGGCTCCAAGTATACGGCAAAGGCACCCTTTCTTTTGCCACCACCTTGATC 1693 Query 80106 TATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACC 80165 | ||| | |||||| | ||| |||| | | |||||| | | ||||||| || || Sbjct 1694 GACGTAACGAGCGGTATCATTGAAAACACGAAGCATTGGTACCAAACCATTGCTAGTGCC 1753 Query 80166 ATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCC 80225 |||||| || ||||| ||| | ||||||||| ||| | | | ||| || || Sbjct 1754 ATTGGTACCACGAATATAACTTTGAGCGGCACGAATTTTATGTACGGCAACACCAATACC 1813 Query 80226 CCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATGCT 80285 || || | || || || ||||| ||| |||| || || |||||||| || || || Sbjct 1814 ACCGGCACTCTTTGAAATCAATGCACATTGTTTCAAGGTGTCATAGATACCATCGATTGA 1873 Query 80286 ATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTG 80324 ||| || |||| | || | ||||| ||||||||| Sbjct 1874 ATCCTCCTTCATTTGAACCAAGAAACATGAAGACATTTG 1912 >seq316 Length=22015 Score = 107 bits (118), Expect = 3e-18 Identities = 137/184 (74%), Gaps = 6/184 (3%) Strand=Plus/Minus Query 50248 CTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCC 50307 ||||| |||| ||||| || |||||||| || || ||||| || ||||||||||| || Sbjct 20397 CTATAGGTTTCAGAATGTATATTTTCAATTGCAATTTGAAAACCATAGAAACATCTTGCT 20338 Query 50308 TCGGTAATCTGCACTTCTGTACA-AAATC--GTTCAGCTAAATTTTCATTCACTATTCCG 50364 || | ||| || ||||| | ||| ||||| ||| || | ||||||||| || || || Sbjct 20337 TCTGGAATTTGTACTTCAG-ACATAAATCTAGTT--GCAAGATTTTCATTAACAATACCA 20281 Query 50365 TCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGT 50424 ||| || |||||||| ||||| |||||| || || || ||| || ||||||| Sbjct 20280 TCAGATGCAGCAAAAAATGCCAAAACATGTGAGATGAAGTGACGTTCATTATCTGTTAGT 20221 Query 50425 TTAT 50428 |||| Sbjct 20220 TTAT 20217 Score = 105 bits (116), Expect = 1e-17 Identities = 208/300 (69%), Gaps = 12/300 (4%) Strand=Plus/Minus Query 49959 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAG 50018 ||| || ||||| || || | ||| || || | ||| | ||| || ||||| || | Sbjct 20785 ACAAGCAAAATCACAATGTAAACCTTCATCACGTGAAATCAATTCATTTGAAAATGTTAA 20726 Query 50019 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGA-CGCAAATGACC-CAGAAAAG 50076 || ||||||| || | |||||| | |||||| || || | ||| ||| | ||||| Sbjct 20725 ACCTGGCATTAAACCTCTCTTTTTCAACCAAAAAATTGAACAAAAACTACCACTGAAAA- 20667 Query 50077 AAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTG--TCAT 50134 | || || || ||||| ||||| ||||| | | ||| || | || || |||| Sbjct 20666 -ATATACCCTCAACTGCTGCAAATGCAACCAAACGTTCTGCAAA--TGAATTTGAATCAT 20610 Query 50135 GTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCAT 50194 ||||| || ||||| || ||||||||||| ||||| || || ||||| || |||| Sbjct 20609 TAATCCATCTTAATGCCCATTCTGCCTTCTTTTTAACACATGGAATTGTTTCAATTGCAT 20550 Query 50195 TAAAGAGATAGttttt--ttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATA 50252 |||| | | | ||| || || ||||||||| |||||| || || |||||||| || Sbjct 20549 TAAATAATTTATCTTTAGTTTGTT--TATCTTTAATATAAGTTTCAATTAAAAGACTTTA 20492 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718240868322040