Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20intermedium_20[genbank_20GCA_5F000277465.1_202012- 07-10] 3,111 sequences; 30,529,520 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq316 147 2e-30 >seq316 Length=22015 Score = 147 bits (162), Expect = 2e-30 Identities = 350/520 (67%), Gaps = 17/520 (3%) Strand=Plus/Minus Query 13604 TTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCCATAAAATCAAATGGATTTAT 13663 ||| || ||||| | ||| | || | || || ||||||| | || || |||||| Sbjct 21052 TTCGAAAAAGTTTGATTTTCTTTGTAAAGAGATCATTTCCATCCATTCGAAAGGATTTGA 20993 Query 13664 TGACATAAACACTTTATCACAACCTAGTTCTAATAGTAATCTATCAGCAATAAACTCAAT 13723 || | || | || | | |||||| | | ||| | |||||| ||||||||| Sbjct 20992 AGAGTTGAAAATCTTTTTATAACCTAAAGAGACCACTAAACGATCAGCGCAAAACTCAAT 20933 Query 13724 ATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATATTGGTTAA 13783 ||||| |||||| || | |||||||| |||| | || || | | || | Sbjct 20932 GTATTGTGACATTGAACGTGAGTTCATACCGATTAAATCCACTGGTAATGAATCACAAAT 20873 Query 13784 AAATTCTTTTTCTATAGACACAGCCTCTTTTATAATAATTGTAATAATCTCATTAGAAGG 13843 || |||||||| || || || || ||||| || || ||| || | || || Sbjct 20872 GAACTCTTTTTCACAAGCAACGGCATCCTTTATCATTGTTTCAATGATTT--TTGGATCC 20815 Query 13844 AGGATATT-TTAGATGTTT---AAAAATTAAACACGCAAAATCACAATGAAGGCCCTCAT 13899 | || || || | |||| | | | | ||| |||||||||||||| | || |||| Sbjct 20814 A--ATTTTCTTTGTAGTTTCGTATAGAGAAGACAAGCAAAATCACAATGTAAACCTTCAT 20757 Query 13900 CTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACC 13959 | | ||| | ||| |||||||||||||| |||||||| || |||| ||||| |||| Sbjct 20756 CACGTGAAATCAATTCATTTGAAAATGTTAAACCTGGCATTAAACCTCTCTTTTTCAACC 20697 Query 13960 AAAATATTGCAGCAAATG-ACC-CGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTAT 14017 |||| |||| | ||| ||| | ||||| |||| ||||||||||| ||||| || | Sbjct 20696 AAAAAATTGAACAAAAACTACCACTGAAAA--ATATACCCTCAACTGCTGCAAATGCAAC 20639 Query 14018 TAATCGTTCTCCAAACGATGCTTTTTTGTTCGAT-ATCCATTTTCTAGCCCATTCAGAtt 14076 || |||||| |||| || ||| || | |||||| || |||||||| | | Sbjct 20638 CAAACGTTCTGCAAATGA----ATTTGAATCATTAATCCATCTTAATGCCCATTCTGCCT 20583 Query 14077 tttttttAATAAAATCCATTGTTTCAATAGCATTAAATAA 14116 | ||||||| | | ||||||||||| ||||||||||| Sbjct 20582 TCTTTTTAACACATGGAATTGTTTCAATTGCATTAAATAA 20543 Score = 113 bits (124), Expect = 4e-20 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 14163 CTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCT 14222 ||||| ||||||| ||||| ||||| || || || ||||||||||| || ||||| ||| Sbjct 20397 CTATAGGTTTCAGAATGTATATTTTCAATTGCAATTTGAAAACCATAGAAACATCTTGCT 20338 Query 14223 TCCGACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCA 14282 || | ||||||||| || |||||| || | |||||||||||| ||||||||| Sbjct 20337 TCTGGAATTTGTACTTCAGACATAAATCTAGTTGCAAGATTTTCATTAACAATACCATCA 20278 Query 14283 CTAGCTGCAAAAAATGCCAA 14302 || |||||||||||||| Sbjct 20277 GATGCAGCAAAAAATGCCAA 20258 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479709344577400