Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20intermedium_20[genbank_20GCA_5F000277465.1_202012- 07-10] 3,111 sequences; 30,529,520 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq316 152 5e-32 >seq316 Length=22015 Score = 152 bits (168), Expect = 5e-32 Identities = 348/519 (67%), Gaps = 15/519 (3%) Strand=Plus/Minus Query 13392 TTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTCCATAAAATCGAATGGATTTGT 13451 ||| |||||||| | ||| | || | || || ||||||| | ||||| ||||||| Sbjct 21052 TTCGAAAAAGTTTGATTTTCTTTGTAAAGAGATCATTTCCATCCATTCGAAAGGATTTGA 20993 Query 13452 TGACATAAACACTTTATCACAACCTAGTTCTAATAATAATCTATCAGCAATAAACTCAAT 13511 || | || | || | | |||||| | | ||| | |||||| ||||||||| Sbjct 20992 AGAGTTGAAAATCTTTTTATAACCTAAAGAGACCACTAAACGATCAGCGCAAAACTCAAT 20933 Query 13512 ATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATATTAGTTAA 13571 ||||| |||||| || | |||||||| |||| | || || | | || | | Sbjct 20932 GTATTGTGACATTGAACGTGAGTTCATACCGATTAAATCCACTGGTAATGAATCACAAAT 20873 Query 13572 AAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAATCTTAATAATGTCATTAGAAGG 13631 || |||||||| || || || || ||||| || | | ||| || | || || Sbjct 20872 GAACTCTTTTTCACAAGCAACGGCATCCTTTATCATTGTTTCAATGATTT--TTGGATCC 20815 Query 13632 AGGATATT-TTAGATGTTT---AAAAATTAAACACGCAAAATCACAATGAAGGCCCTCAT 13687 | || || || | |||| | | | | ||| |||||||||||||| | || |||| Sbjct 20814 A--ATTTTCTTTGTAGTTTCGTATAGAGAAGACAAGCAAAATCACAATGTAAACCTTCAT 20757 Query 13688 CTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACC 13747 | | ||| | ||| |||||||||||||| |||||||| || |||| ||||| |||| Sbjct 20756 CACGTGAAATCAATTCATTTGAAAATGTTAAACCTGGCATTAAACCTCTCTTTTTCAACC 20697 Query 13748 AAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTA 13807 |||| |||| | || || || ||||| ||||||||||| ||||| || | | Sbjct 20696 AAAAAATTGAACAAAAACTACCACTGAAAAATATACCCTCAACTGCTGCAAATGCAACCA 20637 Query 13808 GTCGTTCTCCAAACGATGCTTTTTTGTTTGAT--ATCCATTTTCTAGCCCATTCAGAttt 13865 |||||| |||| || |||| | || |||||| || |||||||| | || Sbjct 20636 AACGTTCTGCAAATGA-----ATTTGAATCATTAATCCATCTTAATGCCCATTCTGCCTT 20582 Query 13866 ttttttAATAAAATCCATTGTTTCGATTGCATTGAATAA 13904 ||||||| | | |||||||| |||||||| ||||| Sbjct 20581 CTTTTTAACACATGGAATTGTTTCAATTGCATTAAATAA 20543 Score = 122 bits (134), Expect = 8e-23 Identities = 111/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 13951 CTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCT 14010 ||||| ||||||| ||||| ||||| || || || ||||||||||| |||||||| ||| Sbjct 20397 CTATAGGTTTCAGAATGTATATTTTCAATTGCAATTTGAAAACCATAGAAACATCTTGCT 20338 Query 14011 TCTGACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCA 14070 |||| |||||| || || |||||| ||| | ||||||||||||||||||||| Sbjct 20337 TCTGGAATTTGTACTTCAGACATAAATCTAGTTGCAAGATTTTCATTAACAATACCATCA 20278 Query 14071 CTAGCTGCAAAAAATGCCAA 14090 || |||||||||||||| Sbjct 20277 GATGCAGCAAAAAATGCCAA 20258 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478570188878040