Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20intermedium_20[genbank_20GCA_5F000277465.1_202012- 07-10] 3,111 sequences; 30,529,520 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq268 114 1e-20 seq356 111 1e-19 seq64 105 5e-18 seq52 105 5e-18 seq1461 102 6e-17 seq140 93.3 3e-14 >seq268 Length=24546 Score = 114 bits (126), Expect = 1e-20 Identities = 165/233 (71%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| |||||||| || ||||| | || |||||||| | ||||||||| || Sbjct 17379 CCACCACGAAGTCTTAAAACTAAATGAAGTGTTGATTCCTTTTGAATATTGTAATCTGAT 17438 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || ||||| | || ||||||||||| || ||||| || |||| |||||||| | || Sbjct 17439 AAAGTACGACCATCTTCCAATTGTTTACCAGCAAAGATTAATCTTTGTTGATCTGGAGGA 17498 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||| || | || |||| || | ||| | || | | || || Sbjct 17499 ATTCCTTCCTTATTTTGAATTTTTGCTTTTACATTTTCAATATTATCTGAACCTTCAACT 17558 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTTCTT 43115 || | ||||| |||||||| |||| |||||| ||||||||||||||||| || Sbjct 17559 TCAAGAGTTATGGTTTTTCCAGTTAAAGTTTTAACAAAAATTTGCATTTTTTT 17611 >seq356 Length=19801 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 42894 TCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTC 42953 |||||| || ||||| | |||| || ||||| | ||||||||| || | ||||| | Sbjct 11370 TCTTAAAACTAAATGAAGAGTGGATTCTTTTTGGATATTGTAATCAGAGAGAGTACGACC 11429 Query 42954 GTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTT 43013 || || |||||||| || || ||||| |||| |||||||| | || | ||||||||| Sbjct 11430 ATCTTCTAATTGTTTACCAGCGAAAATTAATCTTTGTTGATCTGGTGGAATACCTTCTTT 11489 Query 43014 TTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTAT 43073 || ||| |||| || | ||| | |||| | | || || || | || || Sbjct 11490 ATCTTGAATCTTTGCTTTAACATTTTCAATGTTATCGCTACCTTCAACTTCCAATGTAAT 11549 Query 43074 AGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 ||||| || || |||||||| |||||||||||||| Sbjct 11550 TGTTTTACCTGTAAGAGTTTTAACAAAAATTTGCAT 11585 Score = 82.4 bits (90), Expect = 6e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 42892 AGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGT 42951 ||||||| || ||||| | ||| |||||||| | || || || || | ||||| Sbjct 11140 AGTCTTAGAACTAAATGAAGAGTTGATTCCTTTTGGATGTTATAGTCAGAGAGAGTACGA 11199 Query 42952 TCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCT 43011 | || ||||||||||| || || ||||| | || |||||||| | || | ||||||| Sbjct 11200 CCATCTTCCAATTGTTTACCAGCGAAAATAAGACGTTGTTGATCTGGTGGGATACCTTCT 11259 Query 43012 TTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTT 43071 || || |||| |||| || | | | | || | | || || |||| || Sbjct 11260 TTATCTTGGATCTTGGCTTTTACATTTTCGATATTATCAGAACCTTCAACCTCTAAGGTG 11319 Query 43072 ATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || ||||| || |||| ||||| ||||| |||||||| Sbjct 11320 ATTGTTTTACCAGTTAAGGTTTTAACAAAGATTTGCAT 11357 >seq64 Length=50952 Score = 105 bits (116), Expect = 5e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 42894 TCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTC 42953 |||||| |||||||||| |||| |||||||| | || || ||||| | ||||| | Sbjct 24067 TCTTAAAACCAAATGGAGAGTGGATTCCTTTTGGATGTTATAGTCGGAGAGAGTACGACC 24126 Query 42954 GTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTT 43013 || || |||||||| || || ||||| | || |||||||| | || | ||||||||| Sbjct 24127 ATCTTCTAATTGTTTACCAGCGAAAATAAGACGTTGTTGATCTGGTGGGATACCTTCTTT 24186 Query 43014 TTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTAT 43073 || |||| ||||||| | ||| | || | | || || || | || || Sbjct 24187 ATCTTGGATCTTGGCTTTGACATTCTCAATGTTATCACTGCCTTCAACTTCCAATGTAAT 24246 Query 43074 AGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 ||||| || |||| ||||| |||||||||||||| Sbjct 24247 TGTTTTACCAGTTAAGGTTTTAACAAAAATTTGCAT 24282 >seq52 Length=54870 Score = 105 bits (116), Expect = 5e-18 Identities = 163/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 42894 TCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTC 42953 |||||| |||||||||| |||| || ||||| | ||| ||||| || | ||||| | Sbjct 45451 TCTTAAAACCAAATGGAGAGTGGATTCTTTTTGGATATTATAATCAGAGAGAGTACGACC 45392 Query 42954 GTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTT 43013 || ||||||||||| || || ||||| | || ||||| || | || | ||||||||| Sbjct 45391 ATCTTCCAATTGTTTACCAGCGAAAATGAGACGTTGTTGGTCTGGTGGAATACCTTCTTT 45332 Query 43014 TTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTAT 43073 || || |||| || | ||| | || | | | || || |||| || || Sbjct 45331 ATCTTGAATTTTAGCTTTTACATTTTCAATGTTATCACTACCTTCAACTTCTAAGGTAAT 45272 Query 43074 AGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTTCTTAATTTTATTT 43125 ||||| || |||| ||||| ||||||||||||| || | |||||| ||| Sbjct 45271 GGTTTTACCAGTTAATGTTTTAACAAAAATTTGCA--TTGTAAATTTTTTTT 45222 Score = 105 bits (116), Expect = 5e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 42894 TCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTC 42953 |||||| |||||||||| |||| |||||||| | || || || || | ||||| | Sbjct 46363 TCTTAAAACCAAATGGAGAGTGGATTCCTTTTGGATGTTATAGTCAGAAAGAGTACGACC 46304 Query 42954 GTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTT 43013 || ||||||||||| || || ||||| | || |||||||| | || | ||||||||| Sbjct 46303 ATCTTCCAATTGTTTACCAGCGAAAATAAGACGTTGTTGATCTGGTGGGATACCTTCTTT 46244 Query 43014 TTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTAT 43073 || |||| ||||||| | ||| | || | | || || || | || || Sbjct 46243 ATCTTGGATCTTGGCTTTGACGTTCTCAATGTTATCACTGCCTTCAACCTCCAAGGTAAT 46184 Query 43074 AGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 ||||| || |||| |||||| ||||| |||||||| Sbjct 46183 TGTTTTACCAGTTAAAGTTTTAACAAAGATTTGCAT 46148 Score = 102 bits (112), Expect = 6e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 42894 TCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTC 42953 |||||| || ||||||| |||| || ||||| | |||||||||||| | ||||| | Sbjct 45679 TCTTAAAACTAAATGGAGAGTGGATTCTTTTTGGATATTGTAATCGGAGAGAGTACGACC 45620 Query 42954 GTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTT 43013 || || |||||||| || || ||||| | || ||||| || | || | ||||||||| Sbjct 45619 ATCTTCTAATTGTTTACCAGCGAAAATAAGACGTTGTTGGTCTGGTGGGATACCTTCTTT 45560 Query 43014 TTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTAT 43073 || |||| |||| || | | | | ||| | | || || |||| || || Sbjct 45559 ATCTTGGATCTTGGCTTTTACATTTTCGATATTATCGGAACCTTCAACCTCTAAGGTGAT 45500 Query 43074 AGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 ||||| || |||| ||||| ||||| |||||||| Sbjct 45499 TGTTTTACCAGTTAAGGTTTTAACAAAGATTTGCAT 45464 Score = 102 bits (112), Expect = 6e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 42894 TCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTC 42953 |||||| || ||||||| |||| ||| ||||| | |||||||| || | ||||| | Sbjct 45907 TCTTAAAACTAAATGGAGAGTGGACTCTTTTTGGATGTTGTAATCAGAGAGAGTACGACC 45848 Query 42954 GTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTT 43013 || || ||||| || || || ||||| |||| ||||| || | || | ||||||||| Sbjct 45847 ATCTTCTAATTGCTTACCAGCGAAAATTAATCTTTGTTGGTCTGGTGGGATACCTTCTTT 45788 Query 43014 TTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTAT 43073 || || |||| || | ||| | |||| | | || || |||| || || Sbjct 45787 ATCTTGAATTTTGGCTTTTACATTTTCAATGTTATCGCTACCTTCAACTTCTAAGGTAAT 45728 Query 43074 AGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 ||||| || |||| ||||| |||||||||||||| Sbjct 45727 GGTTTTACCAGTTAAGGTTTTAACAAAAATTTGCAT 45692 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 42901 ACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCC 42960 || || |||| |||| || ||||| | || || ||||| | ||||| | || || Sbjct 46128 ACTAAGTGGAGAGTGGATTCTTTTTGGATGTTATAGTCGGAGAGAGTACGACCATCTTCT 46069 Query 42961 AATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG 43020 |||||||| || || ||||| | || |||||||| | || | ||||||||| || Sbjct 46068 AATTGTTTACCAGCGAAAATAAGACGTTGTTGATCTGGTGGGATACCTTCTTTATCTTGA 46009 Query 43021 ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTT 43080 ||| ||||||| | ||| | || | | | || || || | || || ||||| Sbjct 46008 ATCTTGGCTTTGACGTTCTCAATGTTATCACTACCTTCAACTTCCAATGTAATTGTTTTA 45949 Query 43081 CCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || |||| ||||| |||||||||||||| Sbjct 45948 CCAGTTAAGGTTTTAACAAAAATTTGCAT 45920 >seq1461 Length=5937 Score = 102 bits (112), Expect = 6e-17 Identities = 151/214 (71%), Gaps = 10/214 (5%) Strand=Plus/Minus Query 42901 ACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCC 42960 ||||| || | |||| || ||||| | |||||||||||| |||||||| | || || Sbjct 4102 ACCAAGTGAAGAGTGGATTCTTTTTGGATATTGTAATCGGATAATGTACGACCATCTTCT 4043 Query 42961 AATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG 43020 |||||||| ||||| ||||| | || |||||||| | || | |||||| || || Sbjct 4042 AATTGTTTACCGGCGAAAATGAGACGTTGTTGATCTGGTGGGATACCTTCCTTATC---- 3987 Query 43021 ATCAACTCTTTGACTCTGC-----CAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAG 43075 | | |||||| || | | ||| |||| | | | || || || | || |||| Sbjct 3986 -TTGAATCTTTGTCTTTACATTCTCAATGTTGTCACTACCTTCAACTTCGAGAGTAATAG 3928 Query 43076 TTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 |||| || || || ||||| ||||| |||||||| Sbjct 3927 TTTTACCAGTAAGGGTTTTAACAAAGATTTGCAT 3894 Score = 100 bits (110), Expect = 2e-16 Identities = 157/225 (70%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 42901 ACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCC 42960 || ||||||| |||| |||||||| | |||||||| || | ||||| | || ||| Sbjct 3646 ACTAAATGGAGAGTGGATTCCTTTTGAATGTTGTAATCAGAGAGAGTACGACCATCTTCC 3587 Query 42961 AATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG 43020 |||||||| || || ||||| | || ||||| || | || | |||||| || || Sbjct 3586 AATTGTTTACCAGCGAAAATAAGACGTTGTTGGTCTGGTGGGATACCTTCCTTATCTTGA 3527 Query 43021 ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTT 43080 || ||| || | ||| ||||| | | || || || | || || |||||| Sbjct 3526 ATTTTGGTTTTTACATTTTCAATATTGTCGGAACCTTCTACTTCGAGAGTAATTGTTTTT 3467 Query 43081 CCGGTTAGAGTTTTCACAAAAATTTGCATTTTCTTAATTTTATTT 43125 || || |||||||| ||||||||||||||| | || |||| ||| Sbjct 3466 CCAGTAAGAGTTTTAACAAAAATTTGCATTATAGTATTTTTTTTT 3422 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 42901 ACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCC 42960 || ||||||| |||| |||||||| | |||||||| || | ||||| | || ||| Sbjct 4558 ACTAAATGGAGAGTGGATTCCTTTTGGATGTTGTAATCAGAAAGAGTACGACCATCTTCC 4499 Query 42961 AATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG 43020 |||||||| ||||| ||||| | || |||||||| | || | |||||| || || || Sbjct 4498 AATTGTTTACCGGCGAAAATGAGACGTTGTTGATCTGGTGGGATACCTTCCTTGTC-TTG 4440 Query 43021 A--TCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTT 43078 | | || || || | ||| |||| | | | || || |||| || || |||| Sbjct 4439 AATTTTGGTC-TTAACATTCTCAATGTTGTCACTACCTTCAACTTCTAAGGTAATGGTTT 4381 Query 43079 TTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | || || || ||||| || ||||||||||| Sbjct 4380 TACCAGTGAGGGTTTTGACGAAAATTTGCAT 4350 >seq140 Length=35707 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 42901 ACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCC 42960 || || |||| |||| || ||||| | |||||||| || | ||||| | || || Sbjct 25340 ACTAAGTGGAGAGTGGATTCTTTTTGGATGTTGTAATCAGAAAGAGTACGACCATCTTCT 25399 Query 42961 AATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG 43020 |||||||| || || ||||| |||| |||||||| | || | ||||||||| || | Sbjct 25400 AATTGTTTACCAGCGAAAATTAATCTTTGTTGATCTGGTGGGATACCTTCTTTATCTTGG 25459 Query 43021 ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTT 43080 ||| |||| || | | | | || | |||| || |||| || || ||||| Sbjct 25460 ATCTTGGCTTTTACATTTTCGATATTATCAGAACCCTCAACCTCTAAGGTGATTGTTTTA 25519 Query 43081 CCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || |||| ||||| |||||||||||||| Sbjct 25520 CCAGTTAAGGTTTTAACAAAAATTTGCAT 25548 Score = 87.8 bits (96), Expect = 1e-12 Identities = 152/220 (69%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 42901 ACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCC 42960 || ||||| | |||| || ||||| | |||||||| || | ||||| | || || Sbjct 26024 ACTAAATGAAGAGTGGATTCTTTTTGGATGTTGTAATCAGAAAGAGTACGACCATCTTCT 26083 Query 42961 AATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG 43020 |||||||| || || ||||| |||| ||||| || | || | ||||||||| || | Sbjct 26084 AATTGTTTACCAGCGAAAATTAATCTTTGTTGGTCTGGTGGAATACCTTCTTTGTCTTGG 26143 Query 43021 ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTT 43080 || |||| || | | | |||| | | || || || | || || ||||| Sbjct 26144 ATTTTAGCTTTTACGTTCTCGATATTGTCACTGCCTTCAACTTCGAGAGTGATGGTTTTA 26203 Query 43081 CCGGTTAGAGTTTTCACAAAAATTTGCATTTTC--TTAAT 43118 || || |||||||| ||||||||||||||| || ||||| Sbjct 26204 CCAGTAAGAGTTTTAACAAAAATTTGCATTATCAATTAAT 26243 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 42901 ACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCC 42960 || || |||| |||| || ||||| | |||||||| || | ||||| | || ||| Sbjct 25568 ACTAAGTGGAGAGTGGATTCTTTTTGGATGTTGTAATCAGAAAGAGTACGACCATCTTCC 25627 Query 42961 AATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG 43020 |||||||| || || ||||| | || ||||| || | || | ||||||||| || | Sbjct 25628 AATTGTTTACCAGCGAAAATGAGACGTTGTTGGTCTGGTGGGATACCTTCTTTGTCTTGG 25687 Query 43021 ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTT 43080 || ||||||| | ||| | || | | || || || | || || ||||| Sbjct 25688 ATTTTGGCTTTGACATTTTCAATGTTATCAGAACCTTCAACTTCCAATGTGATTGTTTTA 25747 Query 43081 CCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || |||| |||||| ||||| |||||||| Sbjct 25748 CCAGTTAAAGTTTTAACAAAGATTTGCAT 25776 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381355140252438