Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20intermedium_20[genbank_20GCA_5F000277465.1_202012- 07-10] 3,111 sequences; 30,529,520 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq2826 178 2e-39 seq316 96.9 5e-15 >seq2826 Length=2534 Score = 178 bits (196), Expect = 2e-39 Identities = 563/861 (65%), Gaps = 15/861 (2%) Strand=Plus/Plus Query 71697 GGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTC 71756 ||||| || || ||||| ||||| || | |||| | | ||||| || ||||| Sbjct 1199 GGCAATTGAGGCGAGATTGCAAACTGCAATTTCATCTGGTGATGTGTATTGAATGATTTC 1258 Query 71757 AGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACA 71816 ||||||||||||||||| | ||||| || | |||||||||||| || || || Sbjct 1259 AGTGCAAAGATTACTACTACTAATGGTACCGAGATTTTGTTGATTGGATTTGGAATTGCA 1318 Query 71817 CGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTT 71876 || |||||||| | || || || ||||||||||||| || ||||| ||||| || Sbjct 1319 AGCGTCCTTATACAAGATGAATGGTGTACCAGTTTCAACTTGTGATTCCATAATGGCGAA 1378 Query 71877 CCAGACGACTCGAGCCTTTATTATAT-TCTTGT-ATCTCTTTTCTCTTTCGTATTGTGTA 71934 ||| | || | || || |||| | ||||| | ||| | | | | || | || Sbjct 1379 CCAAAGTTCTTGTGCTTTGATTACACGTCTTGCGAGGTCTGGTGT-TGCCTCATACTTTA 1437 Query 71935 TATA-ATCGTTCGAACTCGTCTCCCCAAGCATTGTCT---AATCCAGGACATTCATTCGG 71990 || | | ||| | ||| || | | || | || || ||| || || Sbjct 1438 AGTAGAGGGCACGATGT--TCTTGGGAATGAGTTTCAGCGAGACCGGGTGCTTCGTTTGG 1495 Query 71991 ACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCA 72050 ||| | | |||||| || |||| | | || || | |||||||| |||| || ||| Sbjct 1496 ACAAAAGAGTGACCAATCACCATTTTGTTCGACACGCTCCATAAAGATATCACTAACCCA 1555 Query 72051 AAGAGCTATA-AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGAT 72109 || || ||| ||||||||||| | ||| |||||| || || || || || || |||| Sbjct 1556 GAGGGC-ATAGAATAGATCTCTAGCTCTCATCTCCTCCTTGCCAGTGTTTTTCTTGAGAT 1614 Query 72110 CGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCC 72169 ||| ||| | | | ||| | |||||| || |||||||||| ||| | | ||| | Sbjct 1615 CGATAAACTCAAAGACATCGGCATGCCATGGCTCCAAGTATACGGCAAAGGCACCCTTTC 1674 Query 72170 GTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAA 72229 |||| || || ||||| | ||| | |||||| | ||| |||| | | |||||| | Sbjct 1675 TTTTGCCACCACCTTGATCGACGTAACGAGCGGTATCATTGAAAACACGAAGCATTGGTA 1734 Query 72230 TAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGC 72289 | ||||||| | |||||||| || ||||| ||| | ||||||||| || Sbjct 1735 CCAAACCATTGCTAGTGCCATTGGTACCACGAATATAACTTTGAGCGGCACGAATTTTAT 1794 Query 72290 TAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTAT 72349 | | | ||| || || || || | || || || ||||| ||| |||| || || | Sbjct 1795 GTACGGCAACACCAATACCACCGGCACTCTTTGAAATCAATGCACATTGTTTCAAGGTGT 1854 Query 72350 CATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATT--TG 72407 ||||||| || || || ||| ||| |||| | || | ||||| ||||||| || Sbjct 1855 CATAGATACCATCGATTGAATCCTCCTTCATTTGAACCAAGAAACATGAAGACATTTGTG 1914 Query 72408 GTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGA 72467 |||| | || || || || ||||| || || | || || || || ||| || || Sbjct 1915 GTGA--AGGTGTACCAGCGTTGAATAATGTTGGTGTGGCATGTGTGAATAGTTTCTCCGA 1972 Query 72468 CAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGAC 72527 || | || || | || || || || || ||| ||| || || | | || Sbjct 1973 TAGACGTCGATAGGTGTTGATCGCAGACTCAATGTCCTCGCCATGGATACCAATGGAAAC 2032 Query 72528 ACGCATTAACATATGCTGAGG 72548 |||||| |||||||| || || Sbjct 2033 ACGCATCAACATATGTTGTGG 2053 >seq316 Length=22015 Score = 96.9 bits (106), Expect = 5e-15 Identities = 114/150 (76%), Gaps = 6/150 (4%) Strand=Plus/Minus Query 42353 CTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCC 42412 ||||| |||| ||||| || |||||||| || || ||||| || ||||||||||| || Sbjct 20397 CTATAGGTTTCAGAATGTATATTTTCAATTGCAATTTGAAAACCATAGAAACATCTTGCT 20338 Query 42413 TCGGTAACCTGTACTTCTGTACA-AAATC--GTTCAGCTAAATTTTCGTTCACTATTCCG 42469 || | || |||||||| | ||| ||||| ||| || | |||||| || || || || Sbjct 20337 TCTGGAATTTGTACTTCAG-ACATAAATCTAGTT--GCAAGATTTTCATTAACAATACCA 20281 Query 42470 TCACTGGCTGCAAAAAACGCCAATACATGT 42499 ||| || |||||||| ||||| |||||| Sbjct 20280 TCAGATGCAGCAAAAAATGCCAAAACATGT 20251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671113101074360