Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20intermedium_20[genbank_20GCA_5F000277465.1_202012- 07-10] 3,111 sequences; 30,529,520 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq52 84.2 2e-11 >seq52 Length=54870 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/234 (68%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || |||| || ||||| |||| || | || || || ||||| ||||| ||||| | Sbjct 45462 CCACCTCTTAATCTTAAAACCAAATGGAGAGTGGATTCTTTTTGGATATTATAATCAGAG 45403 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || | || |||| |||||||| || |||| || | || || || || Sbjct 45402 AGAGTACGACCATCTTCCAATTGTTTACCAGCGAAAATGAGACGTTGTTGGTCTGGTGGA 45343 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | || ||||| || |||||| |||||| | | | |||| | | || | Sbjct 45342 ATACCTTCTTTATCTTGAATTTTAGCTTTTACATTTTCAATGTTATCACTACCTTCAACT 45283 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATTTTAAAT 19048 || | ||||||||||||||| ||||| ||||| ||||||||||||||| ||||| Sbjct 45282 TCTAAGGTAATGGTTTTACCAGTTAATGTTTTAACAAAAATTTGCATTGTAAAT 45229 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414557081342734