Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20intermedium_20[genbank_20GCA_5F000277465.1_202012- 07-10] 3,111 sequences; 30,529,520 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq356 105 4e-18 seq1461 100 2e-16 seq140 98.7 6e-16 seq52 96.9 2e-15 seq268 93.3 3e-14 seq64 87.8 1e-12 >seq356 Length=19801 Score = 105 bits (116), Expect = 4e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| |||||||| | || || ||||| | || || |||||||| |||||||||||||| Sbjct 11358 ACCACCTCTTAATCTTAAAACTAAATGAAGAGTGGATTCTTTTTGGATATTGTAATCAGA 11417 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 | | | | || || ||||| || ||| || ||||| | ||| || || | || Sbjct 11418 GAGAGTACGACCATCTTCTAATTGTTTACCAGCGAAAATTAATCTTTGTTGATCTGGTGG 11477 Query 33262 TATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAAC 33321 || |||||||| || |||| ||| || ||| ||| | ||| | || ||| Sbjct 11478 AATACCTTCTTTATCTTGAATCTTTGCTTTAACATTTTCAATGTTATCGCTACCTTCAAC 11537 Query 33322 GTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 |||| || || ||||| || ||||||||||| || ||||||||||| Sbjct 11538 TTCCAATGTAATTGTTTTACCTGTAAGAGTTTTAACAAAAATTTGCAT 11585 >seq1461 Length=5937 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| |||||||| | | || ||||| | || || || ||||| || ||||||||||| Sbjct 3665 ACCACCTCTTAATCTGAGTACTAAATGGAGAGTGGATTCCTTTTGAATGTTGTAATCAGA 3606 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 | | | | || |||||||| || ||| || || | |||||| ||||| | || Sbjct 3605 GAGAGTACGACCATCTTCCAATTGTTTACCAGCGAAAATAAGACGTTGTTGGTCTGGTGG 3546 Query 33262 TATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAAC 33321 || ||||| || || ||| |||||| ||| ||| ||||| || || Sbjct 3545 GATACCTTCCTTATCTTGAATTTTGGTTTTTACATTTTCAATATTGTCGGAACCTTCTAC 3486 Query 33322 GTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || ||||| || |||||||| ||||||||||| || ||||||||||| Sbjct 3485 TTCGAGAGTAATTGTTTTTCCAGTAAGAGTTTTAACAAAAATTTGCAT 3438 Score = 89.7 bits (98), Expect = 3e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 || |||||||| | | || ||||| | || || || ||||| |||||||||||||| Sbjct 4804 CCACCTCTTAATCTGAGTACTAAATGGAGAGTTGATTCCTTTTGGATATTGTAATCAGAA 4745 Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262 | | | | || || ||||| || ||| ||| || | |||||| || || | || Sbjct 4744 AGAGTACGACCATCTTCTAATTGTTTACCAGCAAAAATAAGACGTTGTTGATCTGGTGGG 4685 Query 33263 ATGCCTTCTTTTTCGCTAATCGCCTGT-TTTACTGTTTGAATCGTGTCGTTGGGTTGAAC 33321 || ||||| || || |||| ||| ||||| | | ||| |||| | || ||| Sbjct 4684 ATACCTTCCTTGTCTTGAATCTT-TGTCTTTACATTCTCAATGTTGTCACTACCTTCAAC 4626 Query 33322 GTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || ||||| || || || || ||||||||||| || || |||||||| Sbjct 4625 TTCGAGAGTAATGGTCTTACCAGTAAGAGTTTTAACAAAGATTTGCAT 4578 Score = 82.4 bits (90), Expect = 5e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| |||||||| | | ||||| || | || || |||||||| ||||||||||| || Sbjct 4121 ACCACCTCTTAATCTAAGTACCAAGTGAAGAGTGGATTCTTTTTGGATATTGTAATCGGA 4062 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 || | | || || ||||| || || || || | |||||| || || | || Sbjct 4061 TAATGTACGACCATCTTCTAATTGTTTACCGGCGAAAATGAGACGTTGTTGATCTGGTGG 4002 Query 33262 TATGCCTTCTTTTTCGCTAATCGCCTGT-TTTACTGTTTGAATCGTGTCGTTGGGTTGAA 33320 || ||||| || || |||| ||| ||||| | | ||| |||| | || || Sbjct 4001 GATACCTTCCTTATCTTGAATC-TTTGTCTTTACATTCTCAATGTTGTCACTACCTTCAA 3943 Query 33321 CGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 | || ||||| || ||||| || ||||| ||||| || || |||||||| Sbjct 3942 CTTCGAGAGTAATAGTTTTACCAGTAAGGGTTTTAACAAAGATTTGCAT 3894 >seq140 Length=35707 Score = 98.7 bits (108), Expect = 6e-16 Identities = 161/231 (70%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| |||||||| | | || ||||| | || || |||||||| || ||||||||||| Sbjct 26005 ACCACCTCTTAATCTAAGAACTAAATGAAGAGTGGATTCTTTTTGGATGTTGTAATCAGA 26064 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 | | | | || || ||||| || ||| || ||||| | ||| ||||| | || Sbjct 26065 AAGAGTACGACCATCTTCTAATTGTTTACCAGCGAAAATTAATCTTTGTTGGTCTGGTGG 26124 Query 33262 TATGCCTTCTTT---TTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTG 33318 || |||||||| || | | | || |||||| | | || |||| || || Sbjct 26125 AATACCTTCTTTGTCTTGGATTTTAGC---TTTTACGTTCTCGATATTGTCACTGCCTTC 26181 Query 33319 AACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||| || ||||| || ||||| || ||||||||||| || ||||||||||| Sbjct 26182 AACTTCGAGAGTGATGGTTTTACCAGTAAGAGTTTTAACAAAAATTTGCAT 26232 >seq52 Length=54870 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| |||||||| | || || ||||| | || ||||||||||| || ||||||||||| Sbjct 45919 ACCACCTCTTAATCTTAAAACTAAATGGAGAGTGGACTCTTTTTGGATGTTGTAATCAGA 45860 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 | | | | || || |||||||| ||| || ||||| | ||| ||||| | || Sbjct 45859 GAGAGTACGACCATCTTCTAATTGCTTACCAGCGAAAATTAATCTTTGTTGGTCTGGTGG 45800 Query 33262 TATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAAC 33321 || |||||||| || ||| |||||| ||| ||| | ||| | || ||| Sbjct 45799 GATACCTTCTTTATCTTGAATTTTGGCTTTTACATTTTCAATGTTATCGCTACCTTCAAC 45740 Query 33322 GTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || | || || ||||| || || | ||||| || ||||||||||| Sbjct 45739 TTCTAAGGTAATGGTTTTACCAGTTAAGGTTTTAACAAAAATTTGCAT 45692 Score = 91.5 bits (100), Expect = 9e-14 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| |||||||| | || |||||||| | || || |||||||| ||||| |||||||| Sbjct 45463 ACCACCTCTTAATCTTAAAACCAAATGGAGAGTGGATTCTTTTTGGATATTATAATCAGA 45404 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 | | | | || |||||||| || ||| || || | |||||| ||||| | || Sbjct 45403 GAGAGTACGACCATCTTCCAATTGTTTACCAGCGAAAATGAGACGTTGTTGGTCTGGTGG 45344 Query 33262 TATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAAC 33321 || |||||||| || ||| |||||| ||| ||| | || | || ||| Sbjct 45343 AATACCTTCTTTATCTTGAATTTTAGCTTTTACATTTTCAATGTTATCACTACCTTCAAC 45284 Query 33322 GTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || | || || ||||| || || | ||||| || ||||||||||| Sbjct 45283 TTCTAAGGTAATGGTTTTACCAGTTAATGTTTTAACAAAAATTTGCAT 45236 >seq268 Length=24546 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 33158 AACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCA 33217 || || ||||| | ||| || || ||||| ||||||||||| || ||| | | || Sbjct 17394 AAAACTAAATGAAGTGTTGATTCCTTTTGAATATTGTAATCTGATAAAGTACGACCATCT 17453 Query 33218 TCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCG 33277 |||||||| || ||| ||| ||||| | ||| || || | || || ||||| || | Sbjct 17454 TCCAATTGTTTACCAGCAAAGATTAATCTTTGTTGATCTGGAGGAATTCCTTCCTTATTT 17513 Query 33278 CTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTT 33337 ||| |||||| ||| ||| | || || ||| || |||||||| ||| Sbjct 17514 TGAATTTTTGCTTTTACATTTTCAATATTATCTGAACCTTCAACTTCAAGAGTTATGGTT 17573 Query 33338 TTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTTT 33373 ||||| || | |||||| || ||||||||||| ||| Sbjct 17574 TTTCCAGTTAAAGTTTTAACAAAAATTTGCATTTTT 17609 >seq64 Length=50952 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| |||||||| | || || ||||| | || || |||||||| || || || ||||| Sbjct 24283 ACCACCTCTTAATCTTAAAACTAAATGAAGAGTTGATTCTTTTTGAATGTTATAGTCAGA 24342 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 | | | | || || ||||| || ||| ||| || | |||||| || || | || Sbjct 24343 GAGAGTACGACCATCTTCTAATTGTTTACCAGCAAAGATGAGACGTTGTTGATCTGGTGG 24402 Query 33262 TATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAAC 33321 || |||||||| || ||| |||||| ||| ||| | || | || ||| Sbjct 24403 AATACCTTCTTTATCTTGAATTTTGGCTTTTACATTTTCAATGTTATCACTACCTTCAAC 24462 Query 33322 GTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 |||| ||| || ||||| || || | |||||| || ||||||||||| Sbjct 24463 TTCCAAAGTAATTGTTTTACCAGTTAAAGTTTTAACAAAAATTTGCAT 24510 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318765513447678