Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20intermedium_20[genbank_20GCA_5F000277465.1_202012- 07-10] 3,111 sequences; 30,529,520 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq52 109 5e-19 seq356 104 2e-17 seq268 98.7 8e-16 seq64 98.7 8e-16 seq1461 95.1 1e-14 seq140 86.0 5e-12 >seq52 Length=54870 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || |||| ||| || || |||||||| || || ||||||||||| || || ||||| Sbjct 45462 CCACCTCTTAATCTTAAAACCAAATGGAGAGTGGATTCTTTTTGGATATTATAATCAGAG 45403 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | ||| | ||||||||||||||| || || |||| || | ||||| || || Sbjct 45402 AGAGTACGACCATCTTCCAATTGTTTACCAGCGAAAATGAGACGTTGTTGGTCTGGTGGA 45343 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | |||||||| || |||||| ||| || | ||| ||| | | ||| | Sbjct 45342 ATACCTTCTTTATCTTGAATTTTAGCTTTTACATTTTCAATGTTATCACTACCTTCAACT 45283 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 || | |||||||||||| || || || ||||| ||||||||||||||| Sbjct 45282 TCTAAGGTAATGGTTTTACCAGTTAATGTTTTAACAAAAATTTGCATT 45235 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || |||| ||| || || || ||||| || || || |||||||| ||||||||||| Sbjct 45918 CCACCTCTTAATCTTAAAACTAAATGGAGAGTGGACTCTTTTTGGATGTTGTAATCAGAG 45859 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | ||| | |||||| ||||| || || || |||| | || ||||| || || Sbjct 45858 AGAGTACGACCATCTTCTAATTGCTTACCAGCGAAAATTAATCTTTGTTGGTCTGGTGGG 45799 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | |||||||| || |||||| ||| || | ||| ||||| | ||| | Sbjct 45798 ATACCTTCTTTATCTTGAATTTTGGCTTTTACATTTTCAATGTTATCGCTACCTTCAACT 45739 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || | |||||||||||| || || || ||||| |||||||||||||| Sbjct 45738 TCTAAGGTAATGGTTTTACCAGTTAAGGTTTTAACAAAAATTTGCAT 45692 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || |||| ||| || | || || || || || ||||||||||| ||||| || ||| Sbjct 46146 CCACCTCTTAATCTAAGAACTAAGTGGAGAGTGGATTCTTTTTGGATGTTATAGTCGGAG 46087 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | ||| | |||||| |||||||| || || ||||||| | |||||||| || Sbjct 46086 AGAGTACGACCATCTTCTAATTGTTTACCAGCGAAAATAAGACGTTGTTGATCTGGTGGG 46027 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | |||||||| || ||| || ||| || | ||| ||| | | ||| | Sbjct 46026 ATACCTTCTTTATCTTGAATCTTGGCTTTGACGTTCTCAATGTTATCACTACCTTCAACT 45967 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 |||| ||||| ||||| || || || ||||| |||||||||||||| Sbjct 45966 TCCAATGTAATTGTTTTACCAGTTAAGGTTTTAACAAAAATTTGCAT 45920 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || |||| ||| || || || ||||| || || ||||||||||| || ||||||||| Sbjct 45690 CCACCTCTTAATCTTAAAACTAAATGGAGAGTGGATTCTTTTTGGATATTGTAATCGGAG 45631 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | ||| | |||||| |||||||| || || ||||||| | ||||| || || Sbjct 45630 AGAGTACGACCATCTTCTAATTGTTTACCAGCGAAAATAAGACGTTGTTGGTCTGGTGGG 45571 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | |||||||| || || || ||| || | | | | |||| | ||| Sbjct 45570 ATACCTTCTTTATCTTGGATCTTGGCTTTTACATTTTCGATATTATCGGAACCTTCAACC 45511 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || | ||| || ||||| || || || ||||| ||||| |||||||| Sbjct 45510 TCTAAGGTGATTGTTTTACCAGTTAAGGTTTTAACAAAGATTTGCAT 45464 >seq356 Length=19801 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || |||| ||| || || || ||||| || || ||||||||||| || |||||||| Sbjct 11359 CCACCTCTTAATCTTAAAACTAAATGAAGAGTGGATTCTTTTTGGATATTGTAATCAGAG 11418 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | ||| | |||||| |||||||| || || |||| | || |||||||| || Sbjct 11419 AGAGTACGACCATCTTCTAATTGTTTACCAGCGAAAATTAATCTTTGTTGATCTGGTGGA 11478 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | |||||||| || ||| ||| ||| || | ||| ||||| | ||| | Sbjct 11479 ATACCTTCTTTATCTTGAATCTTTGCTTTAACATTTTCAATGTTATCGCTACCTTCAACT 11538 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 |||| ||||| ||||| || || | ||||| |||||||||||||| Sbjct 11539 TCCAATGTAATTGTTTTACCTGTAAGAGTTTTAACAAAAATTTGCAT 11585 >seq268 Length=24546 Score = 98.7 bits (108), Expect = 8e-16 Identities = 153/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 19994 CTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAA 20053 || || || ||||| ||||| ||||| ||||| || |||||||| | ||| | | Sbjct 17391 CTTAAAACTAAATGAAGTGTTGATTCCTTTTGAATATTGTAATCTGATAAAGTACGACCA 17450 Query 20054 TCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTG 20113 |||||||||||||| || ||| | || | || |||||||| || | ||||| || Sbjct 17451 TCTTCCAATTGTTTACCAGCAAAGATTAATCTTTGTTGATCTGGAGGAATTCCTTCCTTA 17510 Query 20114 TCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATG 20173 | ||||||| ||| || | ||| | ||| | ||| ||| | || ||| Sbjct 17511 TTTTGAATTTTTGCTTTTACATTTTCAATATTATCTGAACCTTCAACTTCAAGAGTTATG 17570 Query 20174 GTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATTTTT 20212 ||||| || || || ||||| |||||||||||||||||| Sbjct 17571 GTTTTTCCAGTTAAAGTTTTAACAAAAATTTGCATTTTT 17609 >seq64 Length=50952 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || |||| ||| || || || ||||| || || ||||||||||| ||||| || || Sbjct 24284 CCACCTCTTAATCTTAAAACTAAATGAAGAGTTGATTCTTTTTGAATGTTATAGTCAGAG 24343 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | ||| | |||||| |||||||| || ||| | || || | |||||||| || Sbjct 24344 AGAGTACGACCATCTTCTAATTGTTTACCAGCAAAGATGAGACGTTGTTGATCTGGTGGA 24403 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | |||||||| || |||||| ||| || | ||| ||| | | ||| | Sbjct 24404 ATACCTTCTTTATCTTGAATTTTGGCTTTTACATTTTCAATGTTATCACTACCTTCAACT 24463 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 |||| ||||| ||||| || || || ||||| |||||||||||||| Sbjct 24464 TCCAAAGTAATTGTTTTACCAGTTAAAGTTTTAACAAAAATTTGCAT 24510 >seq1461 Length=5937 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || |||| ||| || | || ||||| || || ||||| ||||| ||||||||||| Sbjct 4576 CCACCTCTTAATCTGAGTACTAAATGGAGAGTGGATTCCTTTTGGATGTTGTAATCAGAA 4517 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | ||| | ||||||||||||||| || || |||| || | |||||||| || Sbjct 4516 AGAGTACGACCATCTTCCAATTGTTTACCGGCGAAAATGAGACGTTGTTGATCTGGTGGG 4457 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | ||||| ||||| |||||| || || | ||| || | | ||| | Sbjct 4456 ATACCTTCCTTGTCTTGAATTTTGGTCTTAACATTCTCAATGTTGTCACTACCTTCAACT 4397 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || | |||||||||||| || || | |||||||| ||||||||||| Sbjct 4396 TCTAAGGTAATGGTTTTACCAGTGAGGGTTTTGACGAAAATTTGCAT 4350 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || |||| ||| || | || ||||| || || ||||| ||||| ||||||||||| Sbjct 3664 CCACCTCTTAATCTGAGTACTAAATGGAGAGTGGATTCCTTTTGAATGTTGTAATCAGAG 3605 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | ||| | ||||||||||||||| || || ||||||| | ||||| || || Sbjct 3604 AGAGTACGACCATCTTCCAATTGTTTACCAGCGAAAATAAGACGTTGTTGGTCTGGTGGG 3545 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | ||||| || || |||||| ||| || | ||| | ||| | ||| | Sbjct 3544 ATACCTTCCTTATCTTGAATTTTGGTTTTTACATTTTCAATATTGTCGGAACCTTCTACT 3485 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 || | ||||| ||||| || || | ||||| ||||||||||||||| Sbjct 3484 TCGAGAGTAATTGTTTTTCCAGTAAGAGTTTTAACAAAAATTTGCATT 3437 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || |||| ||| || | || ||||| || || ||||| ||||| ||||||||||| Sbjct 4348 CCACCTCTTAATCTAAGGACTAAATGGAGGGTGGATTCCTTTTGAATGTTGTAATCAGAG 4289 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | ||| | ||||||||||||||| || || |||| | || ||||| || || Sbjct 4288 AGAGTACGACCATCTTCCAATTGTTTACCAGCGAAAATCAATCTTTGTTGGTCTGGTGGG 4229 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATC---GCCAGGTTCC 20158 | ||||||||||| ||||||| ||| || | ||| | ||| ||| || Sbjct 4228 ATACCTTCTTTGTCTTGAATTTTTGTTTTAACATTTTCAATATTATCTGAGCC---CTCA 4172 Query 20159 GTTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 ||| | || ||||| || || || || ||||| ||||| |||||||| Sbjct 4171 ACTTCAAGAGTGATGGTCTTACCAGTTAATGTTTTAACAAAGATTTGCAT 4122 >seq140 Length=35707 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || |||| ||| || | || || || || || ||||||||||| ||||||||||| Sbjct 25550 CCACCTCTTAATCTAAGAACTAAGTGGAGAGTGGATTCTTTTTGGATGTTGTAATCAGAA 25609 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | ||| | ||||||||||||||| || || |||| || | ||||| || || Sbjct 25610 AGAGTACGACCATCTTCCAATTGTTTACCAGCGAAAATGAGACGTTGTTGGTCTGGTGGG 25669 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | ||||||||||| ||||| ||| || | ||| ||| | ||| | Sbjct 25670 ATACCTTCTTTGTCTTGGATTTTGGCTTTGACATTTTCAATGTTATCAGAACCTTCAACT 25729 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 |||| || || ||||| || || || ||||| ||||| |||||||| Sbjct 25730 TCCAATGTGATTGTTTTACCAGTTAAAGTTTTAACAAAGATTTGCAT 25776 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 19979 TTTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCG 20038 || || |||| ||| || | || ||||| || || ||||| ||||| ||||| ||||| Sbjct 25091 TTACCACCTCTTAATCTAAGAACTAAATGGAGAGTGGATTCCTTTTGAATGTTATAATCA 25150 Query 20039 CCCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACG 20098 | ||| | |||||| |||||||| || ||| | ||||| | ||||| || Sbjct 25151 GAAAGAGTACGACCATCTTCTAATTGTTTACCGGCAAAGATAAGACGTTGTTGGTCTGGT 25210 Query 20099 GGCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCC 20158 || | ||||||||||| ||||| ||| || | ||| || | | ||| Sbjct 25211 GGGATACCTTCTTTGTCTTGGATTTTGGCTTTGACATTTTCAATGTTGTCACTACCTTCA 25270 Query 20159 GTTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 ||| | ||||| ||||| || || || ||||| ||||| |||||||| Sbjct 25271 ACTTCAAGTGTAATTGTTTTACCAGTTAAAGTTTTAACAAAGATTTGCAT 25320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419571291220191