Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20intermedium_20[genbank_20GCA_5F000277465.1_202012- 07-10] 3,111 sequences; 30,529,520 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq316 116 3e-21 >seq316 Length=22015 Score = 116 bits (128), Expect = 3e-21 Identities = 370/564 (66%), Gaps = 21/564 (4%) Strand=Plus/Minus Query 12883 TTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTCCATAAAATCGAAAGGATTTTT 12942 ||| |||||||||| ||||| || ||| || || ||||||| | |||||||||||| Sbjct 21052 TTCGAAAAAGTTTGATTTTCTTTGTAAAGAGATCATTTCCATCCATTCGAAAGGATTT-- 20995 Query 12943 CGAACAATAGTAT---TTTTTACACCCTAATTCTAGTAACAATCTGTCAGCAACAAACTC 12999 ||| | | | | |||||| | ||||| | | || | ||||| |||||| Sbjct 20994 -GAAGAGTTGAAAATCTTTTTATAACCTAAAGAGACCACTAAACGATCAGCGCAAAACTC 20936 Query 13000 TATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAATTTTACAGGCATAGCTTCTGT 13059 ||||| ||| |||| || ||||||| || ||||| | || || | | || Sbjct 20935 AATGTATTGTGACATTGAACGTGAGTTCATACCGATTAAATCCACTGGTAATGAATCACA 20876 Query 13060 TAAAAAGtttttttCTATATCAACTGCTTCGATAACTAT-GTCTC--TTATTACGTTCTC 13116 | || | |||||| | |||| || || | | || || || | ||| || Sbjct 20875 AATGAACTCTTTTTCACAAGCAACGGCATCCTTTATCATTGTTTCAATGATTTTTGGATC 20816 Query 13117 TAATGGAGGATTTGATAGATGCTTAAACATCATACATGCAAAATCACAGTGCAATCCTTC 13176 ||| |||| ||| | | || | | | ||| ||||||||||| || || ||||| Sbjct 20815 CAATTTTC--TTTG-TAGTTTCGTATAGAGAAGACAAGCAAAATCACAATGTAAACCTTC 20759 Query 13177 ATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAAT 13236 ||| | || | || ||||||||||||| ||| ||||| | |||| ||||| | Sbjct 20758 ATCACGTGAAATCAATTCATTTGAAAATGTTAAACCTGGCATTAAACCTCTCTTTTTCAA 20699 Query 13237 CCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTAT 13296 |||||| || | | ||| ||| |||||||| || |||||||||||||| || | Sbjct 20698 CCAAAAAATTGAACAAAAACTACCACTGAAAAATATACCCTCAACTGCTGCAAATGCAAC 20639 Query 13297 CAACCTTTCACCATACGTACTATTTTTACTC-TCTATCCACTTTCTGGCCCAGTTTGCTT 13355 ||| | ||| || | | | ||| | || | ||||| || ||||| | ||| | Sbjct 20638 CAAACGTTCTGCAAATG----AATTTGAATCATTAATCCATCTTAATGCCCATTCTGCCT 20583 Query 13356 TTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAATAAATAAttttt--ttCCTTACT 13413 | | |||||| || || |||| ||||| |||||||| | || ||| || || | Sbjct 20582 TCTTTTTAACACATGGAATTGTTTCAATTGCATTAAATAATTTATCTTTAGTTTGTT--T 20525 Query 13414 GTCTAAAATATAAGTATCTATCAA 13437 ||| ||||||||| || || || Sbjct 20524 ATCTTTAATATAAGTTTCAATTAA 20501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430966059167622