Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20intermedium_20[genbank_20GCA_5F000277465.1_202012- 07-10] 3,111 sequences; 30,529,520 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq1461 87.8 2e-12 >seq1461 Length=5937 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTC 48576 |||||||| || ||| |||||||| ||||||||||||| || || || | || || Sbjct 4558 ACTAAATGGAGAGTGGATTCCTTTTGGATGTTGTAATCAG-AAAGAGTACGACCATCTTC 4500 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 || || |||||| || |||| | ||| || ||||| || | || ||||||||| Sbjct 4499 CAATTGTTTACCGGCGAAAATGAGACGTTGTTGATCTGGTGGGATACCTTCCTTGTCTTG 4440 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 |||||| ||| | | | | ||| | || || || || | || |||||||| Sbjct 4439 AATTTTGGTCTTAACATTCTCAATGTTGTCACTACCTTCAACTTCTAAGGTAATGGTTTT 4380 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||| ||||| ||||| || ||||| ||||| Sbjct 4379 ACCAGTGAGGGTTTTGACGAAAATTTGCAT 4350 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421235228129111