Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20intermedium_20[genbank_20GCA_5F000277465.1_202012- 07-10] 3,111 sequences; 30,529,520 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq986 113 5e-20 seq1134 105 8e-18 >seq986 Length=8422 Score = 113 bits (124), Expect = 5e-20 Identities = 193/281 (69%), Gaps = 12/281 (4%) Strand=Plus/Plus Query 164721 ATTACATGTTATTGTTTTTGATGAGATAGATGCTCTTTGCAAAAAACGTGGT----GATA 164776 ||||||| ||||| |||| |||||| | ||||| |||| ||| |||||| || | Sbjct 1777 ATTACATATTATTATTTTCGATGAGTTGGATGCAATTTGTAAATCTCGTGGTTCTAGACA 1836 Query 164777 ATATTATTCA--------TGATGCAGTGGTTAATCAGTTGCTTTCTAAAATAGATGGTGT 164828 | | ||||| |||| |||| || ||||| ||| | | | || |||||||| Sbjct 1837 AGGTGATTCAGGTGTTGGTGATTCAGTTGTAAATCAATTGTTAGCAATGATTGATGGTGT 1896 Query 164829 AGAATCCTTAAATAATATTTTAATTGTAGGTATGACCAACCGACCTGATTTAATTGATGA 164888 ||||| || |||||||||||| | | ||||||||||| || ||| | |||||||| Sbjct 1897 TGAATCATTGAATAATATTTTAGTAATTGGTATGACCAATAGAAAGGATATGATTGATGA 1956 Query 164889 TGCTTTATTACGACCTGGTCGATTAGAATTGAAAATAGAAATAGGATTACCCGACAAAGA 164948 |||||| | || || ||||| || || | | | ||||| |||||| || || | Sbjct 1957 AGCTTTACTTCGTCCAGGTCGTTTGGAGGTACATGTTGAAATTTCATTACCAGATGAACA 2016 Query 164949 AGGACGCCTTCAAATTTTAAAAGTTCATGTGGCTAAAATGA 164989 || | ||||| || || ||||| || ||||||| Sbjct 2017 CGGTAGAGAACAAATCTTTAAGATTCATACAGCAAAAATGA 2057 >seq1134 Length=7495 Score = 105 bits (116), Expect = 8e-18 Identities = 112/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 19356 TACCTGAAATAGGTGATAAGTTTGCTTCTTTTACTGCTCAAAAAGGCACATGTGGTATGA 19415 |||| |||| |||||||||||| | ||| | || |||||| || || ||||||||| Sbjct 4737 TACCACAAATTGGTGATAAGTTTTCATCTCGTCATGGTCAAAAGGGTACTTGTGGTATGG 4678 Query 19416 TTTATCGTCAAGAAGATATGCCTTTTACTAAAGATGGTATAGTGCCGGATCTTATTATTA 19475 ||||||||||||||| |||| | || || ||||| || || ||| ||||| | | Sbjct 4677 CATATCGTCAAGAAGATTTGCCATGGACCGTTGAGGGTATTGTACCAGATATTATTGTAA 4618 Query 19476 ACCCACATGCTTTTCCAAGTCGAATGAC 19503 | ||||||||| ||||| ||| ||||| Sbjct 4617 ATCCACATGCTATTCCATCTCGTATGAC 4590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595848828027600