Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20intermedium_20[genbank_20GCA_5F000277465.1_202012- 07-10] 3,111 sequences; 30,529,520 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq1364 250 4e-61 seq1563 87.8 3e-12 >seq1364 Length=6249 Score = 250 bits (276), Expect = 4e-61 Identities = 397/563 (71%), Gaps = 10/563 (2%) Strand=Plus/Minus Query 193634 AGTTGAACCTGCTGAGATCTATAATCTTGGTGCTCAAAGTCATGTTAAAGTTTCCTTTGA 193693 |||| | || | || || |||||| | || || ||||||||||||||||| || ||||| Sbjct 5111 AGTTAATCCAACAGAAATATATAATTTAGGAGCACAAAGTCATGTTAAAGTATCATTTGA 5052 Query 193694 GATGCCAGAGTATACTTCTAATGTTGATGCTTTAGGAACTCTTAGAATACTTGAAGCAGT 193753 ||| ||||||||||| | ||||||||| |||||| |||| | || | || ||| | Sbjct 5051 TATGTCAGAGTATACTGGTGATGTTGATGGATTAGGATGTCTTCGTTTATTGGATGCAAT 4992 Query 193754 TCGTATGTTG-GGAATGGAGAAAGATGTTCGCATCTATCAGGCATCTACCAGCGAACTGT 193812 ||||| |||| ||| | |||||| | ||| || || ||||| ||| ||||| | Sbjct 4991 TCGTA-GTTGTGGATTAGAGAAAAAGGTTAAATATTACCAAGCATCAACCTCTGAACTCT 4933 Query 193813 ATGGTGGTGTTCTAGGCACTCCACTATCAGAAACCACACCATTTCATCCACGCTCTCCTT 193872 ||||| |||| || | ||||| |||||| ||||||||||| ||||||| || || | Sbjct 4932 ATGGTAAAGTTCAAGAGATTCCACAATCAGAGACCACACCATTCTATCCACGTTCACCAT 4873 Query 193873 ATGGTGTAGCAAAGTTGTATGGTTATTGGATCATCAAGAATTATCGTGAGTCATATGGAT 193932 | | || ||||| || | ||||||||| | || |||||||| |||| | Sbjct 4872 ACGCCGTTGCAAAACAATACGCCTATTGGATCGTTGTAAACTATCGTGAAGCATACGATA 4813 Query 193933 TCCACGCTAGTTCTGGTATTCTCTTCAATCACGAATCTCCAAGAAGAGGTGAGACATTTG 193992 | | || | |||||| | |||||||| ||||| ||| | |||||| || |||| Sbjct 4812 TGTATGCATGCAATGGTATCTTGTTCAATCATGAATCACCACGTAGAGGTCCAACTTTTG 4753 Query 193993 TAACTCGTAAGATTACACAAGGTT--TATCTAAGATCTCTGTTGGATTACAGA--AGATT 194048 ||||| | ||||| ||| | || | || || | ||| || ||| | ||| Sbjct 4752 TAACTAGAAAGAT--CACTCGTTTCGTTGCTGGTATTGCATGTGG--TAAAGATGAAATT 4697 Query 194049 CTTTATCTTGGTAATCTTAATGCTAAGAGGGATTGGGGACACGCAAAGGATTATGTTGAA 194108 || || | |||||| | |||||||| | |||||||| || || | |||||||| || Sbjct 4696 CTCTACTTGGGTAATATCAATGCTAAACGTGATTGGGGTCATGCTAGAGATTATGTCGAG 4637 Query 194109 GCGATGTGGTTAATGTTGCAACAGGATGAACCCGATGATTATGTGATTGCTACAGGTGAA 194168 || |||||||||||||| ||||| || |||| || |||| || || || || |||||| Sbjct 4636 GCAATGTGGTTAATGTTACAACAAGAGAAACCAGAGGATTTCGTTATCGCCACTGGTGAA 4577 Query 194169 CAGTATTCTGTTAGAGACTTTGT 194191 | |||||| | || ||||| Sbjct 4576 ACTCACTCTGTTCGTGAATTTGT 4554 >seq1563 Length=5561 Score = 87.8 bits (96), Expect = 3e-12 Identities = 121/169 (72%), Gaps = 8/169 (5%) Strand=Plus/Minus Query 144946 GAACCTATTTTAGTATCTGGAACTGATGGTGTAGGAACTAAAATTGATATTGCACAAGCC 145005 || || ||||||||||| || || |||||||| || || ||| | | ||||| |||| Sbjct 3811 GATCCAATTTTAGTATCGGGTACAGATGGTGTTGGTACAAAATTAAAGATTGCCCAAGAG 3752 Query 145006 GCTAATGACTATACAACTATTGGTATAGATCTTGTTGCCATGTGTGTGAATGATATAATA 145065 | || || ||||||||||| ||| | || || |||||||| |||||| | | Sbjct 3751 CTTGGTGTTCATGATACTATTGGTATTGATTTGGTGGCAATGTGTGTCAATGATGTTGT- 3693 Query 145066 ACCTGT----GGTGCGAAACCATTATACTTCTTAGATTATATTTCTACT 145110 ||| ||||| ||||||||||||| ||||||||| || | ||| Sbjct 3692 ---TGTTCAAGGTGCCGAACCATTATACTTTTTAGATTATTTTGCAACT 3647 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807523796197160