Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20intermedium_20[genbank_20GCA_5F000277465.1_202012- 07-10] 3,111 sequences; 30,529,520 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq316 170 2e-37 >seq316 Length=22015 Score = 170 bits (188), Expect = 2e-37 Identities = 188/248 (76%), Gaps = 13/248 (5%) Strand=Plus/Minus Query 21475 ACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAA 21534 ||| |||||||||||||| ||||||||||| | || |||||||| ||||||||||| Sbjct 20785 ACAAGCAAAATCACAATGTAAACCTTCATCACGTGAAATCAATTCATTTGAAAATGTTAA 20726 Query 21535 ACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAA--TGCTCCTGAAAAG 21592 ||| |||||||| ||||||||||| |||||||| ||||| ||| | | |||||| Sbjct 20725 ACCTGGCATTAAACCTCTCTTTTTCAACCAAAAAATTGAACAAAAACTACCACTGAAA-- 20668 Query 21593 AAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATG---TAGATTCTTTA 21649 || || |||||||| || ||||||||||| || ||||| | ||| | || || ||| Sbjct 20667 AATATACCCTCAACTGCTGCAAATGCAACCAAACGTTCTGCAAATGAATTTGAATCATTA 20608 Query 21650 TCCAATATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATA 21709 |||||| || |||||||| |||||| | ||||| ||| |||||| ||||| Sbjct 20607 ------ATCCATCTTAATGCCCATTCTGCCTTCTTTTTAACACATGGAATTGTTTCAATT 20554 Query 21710 GCTTTTAA 21717 || || || Sbjct 20553 GCATTAAA 20546 Score = 123 bits (136), Expect = 3e-23 Identities = 146/194 (75%), Gaps = 9/194 (5%) Strand=Plus/Minus Query 21767 CTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCC 21826 ||||| ||||||||||||||||||| || || || ||||| || || ||||||||||| Sbjct 20397 CTATAGGTTTCAGAATGTATATTTTCAATTGCAATTTGAAAACCATAGAAACATCTTGCT 20338 Query 21827 TCTGAACATTGAACCTCGGAATAAAATC--GTTGAGCCAAG-TTTTCATTTACTATTCCA 21883 |||| | ||| || || || ||||| |||| |||| |||||||| || || ||| Sbjct 20337 TCTGGAATTTGTACTTCAGACATAAATCTAGTTG---CAAGATTTTCATTAACAATACCA 20281 Query 21884 TCACTGGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAAT 21943 ||| || |||||||||||||| | || | || || | ||||| |||||||||| | Sbjct 20280 TCAGATGCAGCAAAAAATGCCAAAACATGTGAGATGAAGTGACGTTCATTATCTGTTAGT 20221 Query 21944 TT---TTTCCAATC 21954 || || |||||| Sbjct 20220 TTATATTCCCAATC 20207 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531880115707640