Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20intermedium_20[genbank_20GCA_5F000277465.1_202012- 07-10] 3,111 sequences; 30,529,520 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq2826 154 2e-32 seq316 105 8e-18 seq339 87.8 2e-12 >seq2826 Length=2534 Score = 154 bits (170), Expect = 2e-32 Identities = 474/720 (66%), Gaps = 15/720 (2%) Strand=Plus/Plus Query 62891 GGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTC 62950 ||||| || || ||||| ||||| || | |||| | | ||||| || || || Sbjct 1199 GGCAATTGAGGCGAGATTGCAAACTGCAATTTCATCTGGTGATGTGTATTGAATGATTTC 1258 Query 62951 AGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACA 63010 ||||||||||||||||| | || || || | |||||||||||| || || || Sbjct 1259 AGTGCAAAGATTACTACTACTAATGGTACCGAGATTTTGTTGATTGGATTTGGAATTGCA 1318 Query 63011 CGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTT 63070 || |||||||| | |||||||| ||||||||||||| || ||||| ||||| || Sbjct 1319 AGCGTCCTTATACAAGATGAATGGTGTACCAGTTTCAACTTGTGATTCCATAATGGCGAA 1378 Query 63071 CCAGACGACTCGAGCCTTTATTATAGAT-TTGT-ATCTCCTTTCTCTTTCGT-ATAGTGT 63127 ||| | || | || || |||| | | ||| | || | | || | | ||| | | Sbjct 1379 CCAAAGTTCTTGTGCTTTGATTACACGTCTTGCGAGGTC--TGGTGTTGCCTCATACTTT 1436 Query 63128 ATACA-ATCGTTCGAACTCGTCTCCCCAAACATTGTCC---AATCCAGGACATTCATCCG 63183 | | | | ||| | ||| || | | || | || || ||| | | Sbjct 1437 AAGTAGAGGGCACGATGT--TCTTGGGAATGAGTTTCAGCGAGACCGGGTGCTTCGTTTG 1494 Query 63184 GACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCC 63243 |||| | | ||||| || || | | | || || | |||||||| |||| || || Sbjct 1495 GACAAAAGAGTGACCAATCACCATTTTGTTCGACACGCTCCATAAAGATATCACTAACCC 1554 Query 63244 AAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGA 63302 | || || ||| ||||||||||| | ||| ||||| || || || || || || ||| Sbjct 1555 AGAGGGC-ATAGAATAGATCTCTAGCTCTCATCTCCTCCTTGCCAGTGTTTTTCTTGAGA 1613 Query 63303 TCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGC 63362 |||| ||| | | | ||| | |||||| || |||||||||| ||| | | || Sbjct 1614 TCGATAAACTCAAAGACATCGGCATGCCATGGCTCCAAGTATACGGCAAAGGCACCCTTT 1673 Query 63363 CGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGA 63422 | |||| || || ||||| | ||| | |||||| | ||| |||| | | |||||| Sbjct 1674 CTTTTGCCACCACCTTGATCGACGTAACGAGCGGTATCATTGAAAACACGAAGCATTGGT 1733 Query 63423 ATAATACCGTTTGATA-TACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATT 63481 | | ||| ||| || | ||||||||||| ||||| ||| | ||||||||| || Sbjct 1734 ACCAAACC-ATTGCTAGTGCCATTGGTACCACGAATATAACTTTGAGCGGCACGAATTTT 1792 Query 63482 ACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGT 63541 | | | | ||| || || || || | || || || ||||| ||| |||| || || Sbjct 1793 ATGTACGGCAACACCAATACCACCGGCACTCTTTGAAATCAATGCACATTGTTTCAAGGT 1852 Query 63542 GTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTG 63601 |||||||||||| || || ||| || |||| | || | ||||| ||||||||| Sbjct 1853 GTCATAGATACCATCGATTGAATCCTCCTTCATTTGAACCAAGAAACATGAAGACATTTG 1912 Score = 82.4 bits (90), Expect = 1e-10 Identities = 161/238 (68%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 61995 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 62054 ||||||||||| | | | | || || ||||| ||||||||||| || || |||| | Sbjct 270 GTGAATTGAATTGCATCAGCAGCTGGACGAGTACGAAGATAGTACATACCAGTCTTTAAA 329 Query 62055 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 62114 || |||| ||||| ||||| || ||||||| | | | || || || || Sbjct 330 CCTTTCTTCCAAGAATAAAAGTGCATTGAGGTGAGTTTGGCAAAGGTTGGTTCAGCGATG 389 Query 62115 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 62174 | || | | |||||||||||| ||||| || || | || || ||||| | ||| Sbjct 390 AAAACGTTGAAACTTTGACTTTGATCAATGAAAGCACCACGATCAGCGGCCATATCAATG 449 Query 62175 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 62232 | || |||| |||||||||||| |||||||| | | || | || ||||||| Sbjct 450 AGAGTTCTTTGACGAATTTCCCAAACGGTTTTATAGAGTTCTTTCAATTCATCTGGAA 507 >seq316 Length=22015 Score = 105 bits (116), Expect = 8e-18 Identities = 116/150 (77%), Gaps = 6/150 (4%) Strand=Plus/Minus Query 33592 CTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCC 33651 ||||| |||| ||||| || |||||||| || || ||||| || ||||||||||| || Sbjct 20397 CTATAGGTTTCAGAATGTATATTTTCAATTGCAATTTGAAAACCATAGAAACATCTTGCT 20338 Query 33652 TCGGTAATCTGTACTTCTGTACA-AAATC--GTTCCGCCAAATTTTCATTCACTATTCCG 33708 || | ||| |||||||| | ||| ||||| ||| || | ||||||||| || || || Sbjct 20337 TCTGGAATTTGTACTTCAG-ACATAAATCTAGTT--GCAAGATTTTCATTAACAATACCA 20281 Query 33709 TCACTGGCTGCAAAAAACGCCAATACATGT 33738 ||| || |||||||| ||||| |||||| Sbjct 20280 TCAGATGCAGCAAAAAATGCCAAAACATGT 20251 >seq339 Length=20847 Score = 87.8 bits (96), Expect = 2e-12 Identities = 180/264 (68%), Gaps = 4/264 (2%) Strand=Plus/Plus Query 80955 GTGATAGGTATCGATGAAGGACAGTTCTTTCCAGACATTGTTGAATTCTGTGAGCGTATG 81014 || || ||||| |||||||| || || || |||||| |||| |||| |||| | | Sbjct 16065 GTAATTGGTATTGATGAAGGTCAATTTTTCCCAGACGTTGTACAATTTAGTGAAGATTTA 16124 Query 81015 GCAAACGAAGGAAAAATAGTTATAGTAGCCGCACTCGATGGGACATTTCAACGTAAACCG 81074 ||||| |||| |||| ||||| | |||||||||||||| ||||| ||| | ||||| Sbjct 16125 GCAAATCAAGGTAAAACCGTTATTATTGCCGCACTCGATGGTACATTCCAAAGAAAACCA 16184 Query 81075 TT-TAATAATATTTTGAATCTTA-TTCCATTATCTGAAATGGTGGTAAAACTAACTGCTG 81132 || ||| |||| |||| | || ||||| | ||| |||| || | Sbjct 16185 TTCCAATCTGTCATTGA--CTTAGTATCAAAGGCTGAATATATTACAAAGTTAACCGCCG 16242 Query 81133 TGTGTATGAAATGCTTTAAGGAGGCTTCCTTTTCTAAACGATTGGGTGAGGAAACCGAGA 81192 | |||||| ||||| || || ||| ||||||| || || | | ||| ||| | Sbjct 16243 TTTGTATGGTATGCTACAATGAAGCTGCCTTTTCAAAGCGTATCGTTGAAAGTGACGACA 16302 Query 81193 TAGAAATAATAGGAGGTAATGATA 81216 | ||| | || ||||||| ||||| Sbjct 16303 TTGAATTGATTGGAGGTATTGATA 16326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622922975140760