Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20intermedium_20[genbank_20GCA_5F000277465.1_202012- 07-10] 3,111 sequences; 30,529,520 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq2826 333 7e-86 seq2574 149 2e-30 seq316 122 2e-22 >seq2826 Length=2534 Score = 333 bits (368), Expect = 7e-86 Identities = 660/966 (68%), Gaps = 17/966 (2%) Strand=Plus/Minus Query 363355 GTTATCAATTATGAGAAGGATCTCGAGTATGATATTTTCGGATATAAGACGATGGAGAAA 363414 || ||| ||||| | ||| |||| |||||| | || || | || || ||||| Sbjct 2152 GTGATCGATTATTATCGTGATTTCGACTATGATTTCTTTGGGTTCAAAACATTGGAGCGT 2093 Query 363415 TCCTACCTATCTCGTATCAATGGTGATATTGTTGAACGCCCGCAGCATATGTTAATGCGT 363474 || ||||| |||||| |||| | ||||| || || || || |||||||| |||||| Sbjct 2092 TCATACCTTCATCGTATTGGTGGTAAAATTGTAGAGCGTCCACAACATATGTTGATGCGT 2033 Query 363475 GTTGCTATTGGTATCCATTGCCCGGATGTTGATGCCGCGATTGAAACATATAAGCTTCTA 363534 ||| | |||||||||||| || ||| |||| | ||||| | || ||| | |||| Sbjct 2032 GTTTCCATTGGTATCCATGGCGAGGACATTGAGTCTGCGATCAACACCTATCGACGTCTA 1973 Query 363535 AGTGCTCGTGTATTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCA 363594 | ||||||| || ||||| |||||| | | ||| ||||| || | | ||| Sbjct 1972 TCGGAGAAACTATTCACACATGCCACACCAACATTATTCAACGCTGGTACACCTTCACCA 1913 Query 363595 CAGATGTCTTCTTGCTTTCTTC-TAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGA 363653 || |||||||| || |||||| | |||||||||| ||||| ||||| ||||||| ||| Sbjct 1912 CAAATGTCTTCATG-TTTCTTGGTTCAAATGAAGGAGGATTCAATCGATGGTATCTATGA 1854 Query 363654 CACACTTAAGAATTGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCA 363713 ||| | || | ||||| | ||||| |||| ||| || || |||||||| | | || Sbjct 1853 CACCTTGAAACAATGTGCATTGATTTCAAAGAGTGCCGGTGGTATTGGTGTTGCCGTACA 1794 Query 363714 CAATGTTCGTGCACAGAACAGTTACATTCGCGGCACAGGGGGATACTCG-AATGGGCTGG 363772 || ||||||| | ||||| ||||| || || || ||| | ||||| ||| Sbjct 1793 TAAAATTCGTGCCGCTCAAAGTTATATTCGTGGTACCAATGGC-ACTAGCAATGGTTTGG 1735 Query 363773 TTCCCATGCTTCGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGC 363832 | || ||||||||||| || | |||| || | |||||||| || ||||| || || Sbjct 1734 TACCAATGCTTCGTGTTTTCAATGATACCGCTCGTTACGTCGATCAAGGTGGTGGCAAAA 1675 Query 363833 GCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTG 363892 | || || || ||||| | || | ||||| ||||||||| | ||||||||| | | Sbjct 1674 GAAAGGGTGCCTTTGCCGTATACTTGGAGCCATGGCATGCCGATGTCTTTGAGTTTATCG 1615 Query 363893 AGCTCCGGAAAAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTT 363952 | ||| ||||||||| || || ||||| || | || | ||||| |||||||| || | Sbjct 1614 ATCTCAAGAAAAACACTGGCAAGGAGGAGATGAGAGCTAGAGATCTATTCTATGCCCTCT 1555 Query 363953 GGGTTTCTGACCATTTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCC 364012 ||||| ||| |||||| |||| || || | | |||||||||||||||| | Sbjct 1554 GGGTTAGTGATATCTTTATGGAGCGTGTCGAACAAAATGGTGATTGGTCACTCTTTTGTC 1495 Query 364013 CACACGAATGTCCAGGTCTTTCCGATGTATGGGGT---GACGACTATGTTGCTCTATACG 364069 || ||||| || ||||| || || | | | || || ||| || ||| Sbjct 1494 CAAACGAAGCACCCGGTCT---CGCTGAAACTCATTCCCAAGAACATCGTGCCCTCTACT 1438 Query 364070 AAAAGTATGAATCGGAGGGAAAGGCTCGTAAGAC----AATTCCCGCACAGAAGCTATGG 364125 ||||||||| | | | |||| ||||| ||| ||||| | || ||| Sbjct 1437 TAAAGTATGAGGC-AACACCAGACCTCGCAAGACGTGTAATCAAAGCACAAGAACTTTGG 1379 Query 364126 TTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCG 364185 || ||||| ||||| || || |||| || || ||||| | || ||||| || || | Sbjct 1378 TTCGCCATTATGGAATCACAAGTTGAAACTGGTACACCATTCATCTTGTATAAGGACGCT 1319 Query 364186 TGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAG-AGCAACCTATGTAC 364244 ||||| ||| ||||| || || | || ||||| ||| || || || || || || || Sbjct 1318 TGCAATTCCAAATCCAATCAACAAAATCTCGGTACCATT-AGTAGTAGTAATCTTTGCAC 1260 Query 364245 CGAGATTATTGAATACACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGC 364304 || || ||| ||||||| | || || || | ||| || || || || || || || || Sbjct 1259 TGAAATCATTCAATACACATCACCAGATGAAATTGCAGTTTGCAATCTCGCCTCAATTGC 1200 Query 364305 GCTTCC 364310 ||||| Sbjct 1199 CCTTCC 1194 Score = 114 bits (126), Expect = 3e-20 Identities = 286/432 (66%), Gaps = 12/432 (3%) Strand=Plus/Minus Query 364732 CGCAACTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAAC 364791 || ||||||||| | | || || ||||| || ||||| ||| || ||||| || ||| Sbjct 742 CGTAACTCCCTCTTAATTGCACCAATGCCAACCGCTTCAACTAGTCAAATCCTTGGTAAC 683 Query 364792 AACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAA 364851 ||||| ||||| ||||| | || || |||| || || || | | || || Sbjct 682 AACGAATGCTTTGAACCATACACTTCAAACATTTACAGTCGTCGTGTATTGGCTGGTGAG 623 Query 364852 TTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGAC 364911 ||| | | || ||||| | | | |||||||| || || | ||| || Sbjct 622 TTTACTATCGTCAATAAACAATTGTTGGAGGATCTTATGGAATTGGGTATTTGG----AC 567 Query 364912 AGCA----TGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATT 364967 | || ||||||| | ||||| || || |||||| | || |||| || | Sbjct 566 ACCAGAGATGAAGAATCAAATCATTGCAGCACGTGGTTCAATCCAATCCATTGGTGGCAT 507 Query 364968 TCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATT--TCCATGCGAACTCTC 365025 |||||| || |||| | || |||||||| ||||||||| || | | ||||||| Sbjct 506 TCCAGATGAATTGAAAGAACTCTATAAAACCGTTTGGGAAATTCGTCAAAG--AACTCTC 449 Query 365026 ATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTC 365085 ||||||||||| || ||||| |||||||| || ||| || || || ||||| ||| Sbjct 448 ATTGATATGGCCGCTGATCGTGGTGCTTTCATTGATCAAAGTCAAAGTTTCAACGTTTTC 389 Query 365086 ATGACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGT 365145 || || | ||||||| ||||| || || || ||||| || || ||||| ||| Sbjct 388 ATCGCTGAACCAACCTTTGCCAAACTCACCTCAATGCACTTTTATTCTTGGAAGAAAGGT 329 Query 365146 CTTAAGACAGGT 365157 | ||||| ||| Sbjct 328 TTAAAGACTGGT 317 >seq2574 Length=3073 Score = 149 bits (164), Expect = 2e-30 Identities = 320/474 (68%), Gaps = 16/474 (3%) Strand=Plus/Minus Query 145314 ATAAAACGAGGAAAACGAAGAGCAATACCCTTATTTGGGTCAACGATTCCATGTCCTGCC 145373 || ||||| || ||||| | ||| ||||| |||||||| || | || ||| | || Sbjct 2725 ATGAAACGTGGGAAACGTAAAGCTATACCTTTATTTGGATCCAAAATACCAGTGGCAGCT 2666 Query 145374 ATGTGAACCGGAGAAATTGACAAATCTGCCGACAATACTTCCCATACTTGAGTTGGACTA 145433 | ||||| ||||| ||||| |||||||| | ||| |||||||| ||||||| ||| Sbjct 2665 GTATGAACGGGAGATATTGATAAATCTGCAGCCAAAACTTCCCAAACTTGAGATGGTGAG 2606 Query 145434 AACCAAACATCTGGTTTAAGCGATGGTACATCTGCGACATAGTAATCAG-ACG-GTTTCT 145491 ||||||||||| ||||||| || ||| | || || | | | | ||| | || Sbjct 2605 AACCAAACATCAGGTTTAATTGA------ATCGGAGAGATTGAATTGATTACGTGGTTGA 2552 Query 145492 GTGGTACAATATGTGGCGTAAGACTGTCGGACAATTGAATTAAATCTTCATCTGAAAATC 145551 || | | ||| || | | | || || | |||| | |||||| || || | Sbjct 2551 TTGATT--ACATGAGGTTTCAATTCATTGGTGAAGGTAGTTAATTGTTCATCAGAGAAGC 2494 Query 145552 CAGTTCCGATCTTGCATACACTTTGGAACACTTCTTCGTCTGGATCATACACCGCAAGAA 145611 |||| || || ||||| | |||| ||| |||| | || | |||||| || | | Sbjct 2493 CAGTACCAATTTTGCAAAGTGTTTGAAACTCTTCATTGTTTTCATCATAACAAGCCAATA 2434 Query 145612 GGTATGCACCATATACACCAGTACGTTTTCCGCGACCGGTATACCCCGC---AATTGGTA 145668 |||| |||||||| |||||| | ||| || ||| ||||| || |||||||| Sbjct 2433 GGTAAGCACCATAGGTACCAGTTCTTTTACCCTTACC---ATACCAAGCGCCAATTGGTA 2377 Query 145669 CAAGATCACAACTATCACCCATTCCGGCAAGATAATCCTTTTTAAGTTTTAGCCAATTGA 145728 | | ||| ||||||| ||| || | ||| || || |||| |||| ||||||| Sbjct 2376 CCAAATCTAAACTATCGGTCATACCTTGCATATAGTCTTTCTTAATCTTTAACCAATTGT 2317 Query 145729 GAGAACGTTTCGATGGTTCATAGCTAGAGTTATCGTCCAATGATTTTACCATTA 145782 |||||| |||||||||||| | || || || | ||| | ||| ||||||| Sbjct 2316 AAGAACGACGTGATGGTTCATAGATTGATTTCTCTTTCAAAGTTTTCACCATTA 2263 >seq316 Length=22015 Score = 122 bits (134), Expect = 2e-22 Identities = 351/532 (66%), Gaps = 11/532 (2%) Strand=Plus/Plus Query 22420 ACCATTCAATCAATTAAGAATAAGGCAGATTGGGCGCTGAAATGGATGAACAATGAACGT 22479 || |||| || |||| || |||||||| ||||| | | |||||| || || | | Sbjct 20561 ACAATTCCATGTGTTAAAAAGAAGGCAGAATGGGCATTAAGATGGATTAATGATTCAAAT 20620 Query 22480 TCATTCGCGGAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCA 22539 ||||| || |||||| | |||||||||| | ||||| || || || || ||| Sbjct 20621 TCATTTGCAGAACGTTTGGTTGCATTTGCAGCAGTTGAGGGTATATTTTTCAGTGGTAGT 20680 Query 22540 TTTTGTGCAATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAAT 22599 |||||| |||| |||||| | ||||| | | | ||||| ||| |||| ||||||||| Sbjct 20681 TTTTGTTCAATTTTTTGGTTGAAAAAGAGAGGTTTAATGCCAGGTTTAACATTTTCAAAT 20740 Query 22600 GAGTTAATTAGCCGAGATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATATCGGAAT 22659 || || ||| || ||||| ||| | ||| |||||||| ||| | || ||| ||| Sbjct 20741 GAATTGATTTCACGTGATGAAGGTTTACATTGTGATTTTGCTTGTCTTCTCTATACGAAA 20800 Query 22660 CATATCATTCATAAACTTCCATATGAAACTGTACTTGATATTATTACAA---ATGCAGTT 22716 | || || | ||| || || ||| | |||| | || | || |||| ||| Sbjct 20801 C-TA-CA--AAGAAAATTGGATCCAAAA--ATCATTGAAACAATGATAAAGGATGCCGTT 20854 Query 22717 GAACTTGAACGTCTATTTATTTGCGAGGCGTTACCAGTAAGTCTCATTGGTATCAATGCC 22776 | |||| || ||||| || | |||||||| | | || ||||| || | Sbjct 20855 GCTTGTGAAAAAGAGTTCATTTGTGATTCATTACCAGTGGATTTAATCGGTATGAACTCA 20914 Query 22777 GAATCAATGAGTACATATATTAAATTTGTTGCAGATCGTCTATTAATTTCACTCGGTTAT 22836 |||||| ||| ||| | ||| || |||||| || | | || | |||||| Sbjct 20915 CGTTCAATGTCACAATACATTGAGTTTTGCGCTGATCGTTTAGTGGTCTCTTTAGGTTAT 20974 Query 22837 GCAAAGCATTATAACGTCGT-TAATCCATTTGAATGGATGGAACTTATTTCACTTGAAGG 22895 |||| ||| | | || | ||||| || |||||||||||| | || || | || | Sbjct 20975 AAAAAG-ATTTTCAACTCTTCAAATCCTTTCGAATGGATGGAAATGATCTCTTTACAAAG 21033 Query 22896 AAAGACCAATTTCTTCGAAAAAAGAGTTGGTGAATACCAAAAAGCAGGTGTT 22947 ||| | || || |||||| | ||||| |||||| ||| | |||||| Sbjct 21034 AAAATCAAACTTTTTCGAAGGTAAAGTTGCAGAATACGCCAAAACTGGTGTT 21085 Score = 95.1 bits (104), Expect = 3e-14 Identities = 127/177 (72%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 22177 AAACTTACAGAAAACGAACAACATTTTATCAAATATATTCTAGCATTCTTTGCTACCGCA 22236 ||||| ||||| || |||| || || ||| | || || | ||||| |||||| | | Sbjct 20219 AAACTAACAGATAATGAACGTCACTTCATCTCACATGTTTTGGCATTTTTTGCTGCATCT 20278 Query 22237 GACGGTATAGTTTTTGAGAATCTAGTGACTAATTTTGCATCTGAAATTCAATACCCAGAG 22296 || ||||| ||| ||| ||||| | |||| ||| |||||| | ||| ||||| Sbjct 20279 GATGGTATTGTTAATGAAAATCTTGCAACTAGATTTATGTCTGAAGTACAAATTCCAGAA 20338 Query 22297 GCCAGATGTTTCTATGGTGTGCAAATGATGATTGAAAATGTTCACGCGGAAACATAT 22353 || ||||||||||||||| | ||||| ||||||||| | || | ||||| ||| Sbjct 20339 GCAAGATGTTTCTATGGTTTTCAAATTGCAATTGAAAATATACATTCTGAAACCTAT 20395 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303301648732802