Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20intermedium_20[genbank_20GCA_5F000277465.1_202012- 07-10] 3,111 sequences; 30,529,520 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq140 86.0 6e-12 seq52 84.2 2e-11 >seq140 Length=35707 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 131023 AGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCC 131082 || |||||||| | || || |||||||||||||| ||||| | || || || Sbjct 25793 AGAACTAAATGGAGAGTAGATTCCTTTTGAATGTTATAATCAGAAAGAGTACGACCATCT 25852 Query 131083 TCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCG 131142 |||| || || || || |||| | ||| || ||||| || ||||| ||||||||||| Sbjct 25853 TCTAATTGTTTACCGGCAAAGATAAGACGTTGTTGGTCTGGTGGGATACCTTCTTTGTCT 25912 Query 131143 GTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTT 131202 |||||| |||| | || | |||||| |||| || | || | ||| Sbjct 25913 TGGATTTTGGCTTTGACATTTTCAATGTTATCGGAACCTTCGACTTCTAATGTGATTGTT 25972 Query 131203 TTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 ||||| || |||||||| ||||| || ||||| Sbjct 25973 TTACCAGTGAGAGTTTTAACGAAGATTTGCAT 26004 >seq52 Length=54870 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 131026 ACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCT 131085 |||||||| | || ||||| ||||| ||||||||||| | || || || ||| Sbjct 45900 ACTAAATGGAGAGTGGACTCTTTTTGGATGTTGTAATCAGAGAGAGTACGACCATCTTCT 45841 Query 131086 AGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTG 131145 | ||||| || ||| | ||||| | || ||||| || ||||| |||||||| || || Sbjct 45840 AATTGCTTACCAGCGAAAATTAATCTTTGTTGGTCTGGTGGGATACCTTCTTTATC-TTG 45782 Query 131146 ATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTT 131204 | ||| || || | | || | ||||| | || | || | ||||| |||||| Sbjct 45781 AATTTTGGCTTTTACATTTTCAATGTTATCGCTACCTTCAACTTCTAAGGTAATGGTTTT 45722 Query 131205 ACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 ||| |||| ||||| || ||||| ||||| Sbjct 45721 ACCAGTTAAGGTTTTAACAAAAATTTGCAT 45692 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471994444602240