Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20intermedium_20[genbank_20GCA_5F000277465.1_202012- 07-10] 3,111 sequences; 30,529,520 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq2826 163 4e-35 seq339 102 1e-16 >seq2826 Length=2534 Score = 163 bits (180), Expect = 4e-35 Identities = 445/672 (66%), Gaps = 11/672 (2%) Strand=Plus/Plus Query 62792 TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTA 62851 ||||| || || ||||||||||||||||||| | ||||| || | |||||||||||| Sbjct 1245 TATTGAATGATTTCAGTGCAAAGATTACTACTACTAATGGTACCGAGATTTTGTTGATTG 1304 Query 62852 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGAT 62911 || || || || |||||||| | |||||||| ||||||||||||| || ||| Sbjct 1305 GATTTGGAATTGCAAGCGTCCTTATACAAGATGAATGGTGTACCAGTTTCAACTTGTGAT 1364 Query 62912 TCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGAT-TTGT-ATCTCTTTTCTC 62969 || ||||| || ||| | || | || || |||| | | ||| | ||| | | Sbjct 1365 TCCATAATGGCGAACCAAAGTTCTTGTGCTTTGATTACACGTCTTGCGAGGTCTGGTGT- 1423 Query 62970 TTTCGTATAGTGTATACA-ATCGTTCGAACTCGTCTCCCCAAACATTGTCC---AGTCCA 63025 | | ||| | || | | | ||| | ||| || | | || || || Sbjct 1424 TGCCTCATACTTTAAGTAGAGGGCACGATGT--TCTTGGGAATGAGTTTCAGCGAGACCG 1481 Query 63026 GGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAG 63085 || ||| | ||||| | | ||||| || || | | | || || | ||||||| Sbjct 1482 GGTGCTTCGTTTGGACAAAAGAGTGACCAATCACCATTTTGTTCGACACGCTCCATAAAG 1541 Query 63086 AGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGT 63144 | |||| || ||| || || ||| ||||||||||| | ||| ||||| || || || Sbjct 1542 ATATCACTAACCCAGAGGGC-ATAGAATAGATCTCTAGCTCTCATCTCCTCCTTGCCAGT 1600 Query 63145 ATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGC 63204 || || || ||||||| ||| | | | ||| | |||||| || |||||||||| ||| Sbjct 1601 GTTTTTCTTGAGATCGATAAACTCAAAGACATCGGCATGCCATGGCTCCAAGTATACGGC 1660 Query 63205 CATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAAC 63264 | | || | |||| || || ||||| | ||| | |||||| | ||| |||| Sbjct 1661 AAAGGCACCCTTTCTTTTGCCACCACCTTGATCGACGTAACGAGCGGTATCATTGAAAAC 1720 Query 63265 TCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACT 63324 | | |||||| | | ||||||| || |||||||| || ||||| ||| | Sbjct 1721 ACGAAGCATTGGTACCAAACCATTGCTAGTGCCATTGGTACCACGAATATAACTTTGAGC 1780 Query 63325 GGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCA 63384 ||||||||| ||| | | | ||| || || || || | || || || ||||| || Sbjct 1781 GGCACGAATTTTATGTACGGCAACACCAATACCACCGGCACTCTTTGAAATCAATGCACA 1840 Query 63385 TCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACA 63444 | |||| || || |||||||| || || || ||| ||| |||| | || | ||||| Sbjct 1841 TTGTTTCAAGGTGTCATAGATACCATCGATTGAATCCTCCTTCATTTGAACCAAGAAACA 1900 Query 63445 GCTAGACATTTG 63456 ||||||||| Sbjct 1901 TGAAGACATTTG 1912 >seq339 Length=20847 Score = 102 bits (112), Expect = 1e-16 Identities = 182/263 (69%), Gaps = 2/263 (1%) Strand=Plus/Plus Query 80784 GTGATAGGTATTGATGAAGGACAGTTCTTTCCAGACATTGTTGAATTCTGTGAGCGTATG 80843 || || |||||||||||||| || || || |||||| |||| |||| |||| | | Sbjct 16065 GTAATTGGTATTGATGAAGGTCAATTTTTCCCAGACGTTGTACAATTTAGTGAAGATTTA 16124 Query 80844 GCAAACGAAGGAAAAATAGTTATAGTAGCCGCACTCGATGGTACATTTCAACGTAAACCG 80903 ||||| |||| |||| ||||| | |||||||||||||||||||| ||| | ||||| Sbjct 16125 GCAAATCAAGGTAAAACCGTTATTATTGCCGCACTCGATGGTACATTCCAAAGAAAACCA 16184 Query 80904 TTTAATAATATCTTGGATCTTA-TTCCATTATCTGAAATGGTGGTAAAACTAACTGCAGT 80962 || | | || | || |||| | || ||||| | ||| |||| || || Sbjct 16185 TTCCAATCTGTCATTGA-CTTAGTATCAAAGGCTGAATATATTACAAAGTTAACCGCCGT 16243 Query 80963 GTGTATGAAATGCTTTAAGGAGGCTTCCTTTTCTAAACGATTAGGTGCAGAAACCGAGAT 81022 |||||| ||||| || || ||| ||||||| || || | | || | ||| || Sbjct 16244 TTGTATGGTATGCTACAATGAAGCTGCCTTTTCAAAGCGTATCGTTGAAAGTGACGACAT 16303 Query 81023 AGAAATAATAGGAGGTAATGATA 81045 ||| | || ||||||| ||||| Sbjct 16304 TGAATTGATTGGAGGTATTGATA 16326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633607359635600