Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20intermedium_20[genbank_20GCA_5F000277465.1_202012- 07-10] 3,111 sequences; 30,529,520 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq316 161 1e-34 >seq316 Length=22015 Score = 161 bits (178), Expect = 1e-34 Identities = 190/255 (75%), Gaps = 9/255 (4%) Strand=Plus/Minus Query 93092 CACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAA 93151 || ||||| || |||||||||||| || ||||| ||||| ||||| ||||||||| Sbjct 20784 CAAGCAAAATCACAATGTAAACCTTCATCACGTGAAATCAATTCATTTGAAAATGTTAAA 20725 Query 93152 CCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaT 93211 ||||| | | |||| || || | |||||| |||||| |||||||||| |||||| Sbjct 20724 CCTGGCATTAAACCTCTCTTTTTCAACCAAAAAATTGAACAAAAACTACCACTGAAAAAT 20665 Query 93212 ATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAA---AATTTGCGGAATTACTG 93268 ||||| || || ||||||||||| || | |||||| |||| ||||| |||| | Sbjct 20664 ATACCCTCAACTGCTGCAAATGCAACCAAACGTTCTGCAAATGAATTT---GAATCA--- 20611 Query 93269 CTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCG 93328 | |||||| |||| ||||| || || || || |||| ||| || | |||||| || || Sbjct 20610 TTAATCCATCTTAATGCCCATTCTGCCTTCTTTTTAACACATGGAATTGTTTCAATTGCA 20551 Query 93329 TTAAATAGGTAATCT 93343 ||||||| | |||| Sbjct 20550 TTAAATAATTTATCT 20536 Score = 118 bits (130), Expect = 1e-21 Identities = 139/185 (75%), Gaps = 5/185 (3%) Strand=Plus/Minus Query 93390 TTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGA 93449 |||||||||| | ||| || ||||||||||| || || ||||||||||| ||||| | | Sbjct 20390 TTTCAGAATGTATATTTTCAATTGCAATTTGAAAACCATAGAAACATCTTGCTTCTGGAA 20331 Query 93450 TCTGCACTTCTTGAGA-AAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCT 93508 | || ||||| || | |||||| | | ||||||||||| || |||||||| ||||| Sbjct 20330 TTTGTACTTCA-GACATAAATCTAGTTGCAAGATTTTCATTAACAATACCATCAGATGCA 20272 Query 93509 GCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTA---TCC 93565 |||||||| ||||| | ||| || || || |||| |||| | || ||| ||| Sbjct 20271 GCAAAAAATGCCAAAACATGTGAGATGAAGTGACGTTCATTATCTGTTAGTTTATATTCC 20212 Query 93566 CAATC 93570 ||||| Sbjct 20211 CAATC 20207 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556839145075640