Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20intermedium_20[genbank_20GCA_5F000277465.1_202012- 07-10] 3,111 sequences; 30,529,520 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq1712 104 5e-17 seq231 104 5e-17 seq1465 100 6e-16 seq1263 100 6e-16 seq363 100 6e-16 seq1768 98.7 2e-15 seq500 98.7 2e-15 seq25 86.0 1e-11 >seq1712 Length=5082 Score = 104 bits (114), Expect = 5e-17 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 ||||||||| |||||||||||||||||||| ||||||||||||| ||||||| ||||||| Sbjct 472 ATAGCCCGGCTAGCTCAGTCGGTAGAGCGCCAGACTCTTAATCTGGTGGTCGGGGGTTCG 413 Query 142561 AGCCCCACATCGGGC 142575 |||||| | | |||| Sbjct 412 AGCCCCCCGTTGGGC 398 Score = 104 bits (114), Expect = 5e-17 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 ||||||||| |||||||||||||||||||| ||||||||||||| ||||||| ||||||| Sbjct 2297 ATAGCCCGGCTAGCTCAGTCGGTAGAGCGCCAGACTCTTAATCTGGTGGTCGGGGGTTCG 2238 Query 142561 AGCCCCACATCGGGC 142575 |||||| | | |||| Sbjct 2237 AGCCCCCCGTTGGGC 2223 >seq231 Length=26445 Score = 104 bits (114), Expect = 5e-17 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 ||||||||| |||||||||||||||||||| ||||||||||||| ||||||| ||||||| Sbjct 4121 ATAGCCCGGCTAGCTCAGTCGGTAGAGCGCCAGACTCTTAATCTGGTGGTCGGGGGTTCG 4062 Query 142561 AGCCCCACATCGGGC 142575 |||||| | | |||| Sbjct 4061 AGCCCCCCGTTGGGC 4047 >seq1465 Length=5914 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||||| ||||||||||||| ||||||| ||||||||| Sbjct 3417 AGCCCGGCTAGCTCAGTCGGTAGAGCGCCAGACTCTTAATCTGGTGGTCGGGGGTTCGAG 3476 Query 142563 CCCCACATCGGGC 142575 |||| | | |||| Sbjct 3477 CCCCCCGTTGGGC 3489 >seq1263 Length=6771 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||||| ||||||||||||| ||||||| ||||||||| Sbjct 5327 AGCCCGGCTAGCTCAGTCGGTAGAGCGCCAGACTCTTAATCTGGTGGTCGGGGGTTCGAG 5386 Query 142563 CCCCACATCGGGC 142575 |||| | | |||| Sbjct 5387 CCCCCCGTTGGGC 5399 >seq363 Length=19827 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||||| ||||||||||||| ||||||| ||||||||| Sbjct 19651 AGCCCGGCTAGCTCAGTCGGTAGAGCGCCAGACTCTTAATCTGGTGGTCGGGGGTTCGAG 19592 Query 142563 CCCCACATCGGGC 142575 |||| | | |||| Sbjct 19591 CCCCCCGTTGGGC 19579 >seq1768 Length=4924 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||||| ||||||||||||| ||||||| |||||||||| Sbjct 3166 GCCCGGCTAGCTCAGTCGGTAGAGCGCCAGACTCTTAATCTGGTGGTCGGGGGTTCGAGC 3107 Query 142564 CCCACATCGGGC 142575 ||| | | |||| Sbjct 3106 CCCCCGTTGGGC 3095 >seq500 Length=15179 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||||| ||||||||||||| ||||||| |||||||||| Sbjct 14453 GCCCGGCTAGCTCAGTCGGTAGAGCGCCAGACTCTTAATCTGGTGGTCGGGGGTTCGAGC 14512 Query 142564 CCCACATCGGGC 142575 ||| | | |||| Sbjct 14513 CCCCCGTTGGGC 14524 >seq25 Length=66450 Score = 86.0 bits (94), Expect = 1e-11 Identities = 69/82 (84%), Gaps = 1/82 (1%) Strand=Plus/Plus Query 142499 AGATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTT 142558 |||| |||| | |||||||||||||||||||| || || |||| || ||||||| ||||| Sbjct 16228 AGATTGCCCAGATAGCTCAGTCGGTAGAGCGCAAGGCTTTTAACCTTGTGGTCGGGGGTT 16287 Query 142559 CGAGCCCCACATCGGGCAGAAG 142580 |||||||| | | |||| |||| Sbjct 16288 CGAGCCCCCCTTTGGGC-GAAG 16308 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027795830746351