Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20intermedium_20[genbank_20GCA_5F000277465.1_202012- 07-10] 3,111 sequences; 30,529,520 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq268 105 5e-18 seq1461 95.1 9e-15 seq356 95.1 9e-15 seq52 89.7 4e-13 >seq268 Length=24546 Score = 105 bits (116), Expect = 5e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 21831 AAAATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCC 21890 ||||||||||| ||| ||||||| ||||| || |||||||| || | ||| |||| Sbjct 17608 AAAATGCAAATTTTTGTTAAAACTTTAACTGGAAAAACCATAACTCTTGAAGTTGAAGGT 17549 Query 21891 GCAGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAAC 21950 |||| | | | || | || ||||||| |||| || || | ||| | | Sbjct 17548 TCAGATAATATTGAAAATGTAAAAGCAAAAATTCAAAATAAGGAAGGAATTCCTCCAGAT 17489 Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 ||||| ||| | ||||||||||| |||||| | |||||| ||| | | |||||| Sbjct 17488 CAACAAAGATTAATCTTTGCTGGTAAACAATTGGAAGATGGTCGTACTTTATCAGATTAC 17429 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGTATTA 22046 |||||||| |||||||| || |||||| | || ||| Sbjct 17428 AATATTCAAAAGGAATCAACACTTCATTTAGTTTTA 17393 >seq1461 Length=5937 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| ||||||||||||| || || ||||| || | ||| || | | || Sbjct 4122 ATGCAAATCTTTGTTAAAACATTAACTGGTAAGACCATCACTCTTGAAGTTGAGGGCTCA 4181 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || | | | || |||| ||||||| || ||||| ||| | || | ||||| Sbjct 4182 GATAATATTGAAAATGTTAAAACAAAAATTCAAGACAAAGAAGGTATCCCACCAGACCAA 4241 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || ||| | || || ||||| |||||| | |||||| ||| | | |||||||| Sbjct 4242 CAAAGATTGATTTTCGCTGGTAAACAATTGGAAGATGGTCGTACTCTCTCTGATTACAAC 4301 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 ||||| |||||||| || || ||| | || | | ||| |||| || Sbjct 4302 ATTCAAAAGGAATCCACCCTCCATTTAGTCCTTAGATTAAGAGGTGG 4348 Score = 89.7 bits (98), Expect = 4e-13 Identities = 160/234 (68%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| ||||||| | || || || |||||||| | ||| |||| Sbjct 4578 ATGCAAATCTTTGTTAAAACTCTTACTGGTAAGACCATTACTCTCGAAGTTGAAGGTAGT 4637 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || | | | || | ||| ||| ||| || || || ||| | || | | ||| Sbjct 4638 GACAACATTGAGAATGTAAAGACAAAGATTCAAGACAAGGAAGGTATCCCACCAGATCAA 4697 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || | ||||| |||||||| |||||| |||||||| ||| | | ||||||||| Sbjct 4698 CAACGTCTTATTTTTGCTGGTAAACAATTAGAAGATGGTCGTACTCTTTCTGATTACAAT 4757 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGATATTAA 22067 || || |||||||| ||||| ||| | ||| | | ||| |||| ||| ||||| Sbjct 4758 ATCCAAAAGGAATCAACTCTCCATTTAGTACTCAGATTAAGAGGTGGAAATTAA 4811 >seq356 Length=19801 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| ||||||| | || || ||||| ||||| ||||| |||| Sbjct 11585 ATGCAAATTTTTGTTAAAACTCTTACAGGTAAAACAATTACATTGGAAGTTGAAGGTAGC 11526 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || | | | || |||| ||| ||| |||||||| ||| | || | | ||| Sbjct 11525 GATAACATTGAAAATGTTAAAGCAAAGATTCAAGATAAAGAAGGTATTCCACCAGATCAA 11466 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || ||| | || || ||||| |||||| |||||||| ||| | | ||||||||| Sbjct 11465 CAAAGATTAATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGATTACAAT 11406 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || || || ||||| ||||||||| | || ||| | ||| |||| || Sbjct 11405 ATCCAAAAAGAATCCACTCTTCATTTAGTTTTAAGATTAAGAGGTGG 11359 >seq52 Length=54870 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| ||||||| ||||| || ||||| || ||| | || |||| | Sbjct 45464 ATGCAAATCTTTGTTAAAACCTTAACTGGTAAAACAATCACCTTAGAGGTTGAAGGTTCC 45523 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || | | | || | || || || |||||||| ||| | || | ||||| Sbjct 45524 GATAATATCGAAAATGTAAAAGCCAAGATCCAAGATAAAGAAGGTATCCCACCAGACCAA 45583 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || | ||||| || ||||| |||||| |||||||| ||| | ||||||||||| Sbjct 45584 CAACGTCTTATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCCGATTACAAT 45643 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || || || ||||| ||||| ||| | || ||| | ||| |||| || Sbjct 45644 ATCCAAAAAGAATCCACTCTCCATTTAGTTTTAAGATTAAGAGGTGG 45690 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358111221586294