Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20intermedium_20[genbank_20GCA_5F000277465.1_202012- 07-10] 3,111 sequences; 30,529,520 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq2826 168 8e-37 seq2472 84.2 3e-11 >seq2826 Length=2534 Score = 168 bits (186), Expect = 8e-37 Identities = 1067/1677 (64%), Gaps = 68/1677 (4%) Strand=Plus/Plus Query 113597 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATCGAGGAC 113656 || || |||||||| || ||||| | || | |||||| | ||| | ||||| |||| Sbjct 303 CGAAGATAGTACATACCAGTCTTTAAACCTTTCTTCCAAGAATAAAAGTGCATTGAGGTG 362 Query 113657 AACTTGGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAG 113716 | |||| | ||||| | ||||| | ||| | |||||| |||||| ||||| Sbjct 363 AGTTTGGCAAAGGTTGGTTCAGCGATGAAAACGTTGAAACTTTGACTTTGATCAATGAAA 422 Query 113717 CGTCCACGATCCGCCGCCATATCAATCACA-TCCTTCATCTTGATTTCCCACACAGTTCT 113775 |||||||| || ||||||||||| | | | ||| | |||||||| || ||| | Sbjct 423 GCACCACGATCAGCGGCCATATCAATGAGAGTTCTTTGAC-GAATTTCCCAAACGGTTTT 481 Query 113776 GTAGAGGTTCTT--AATATCATCTGGGATATCCACGATATTTTGGATGGAGCCACCCGCC 113833 |||| |||||| ||| |||||||| || | | || |||||| || |||| || Sbjct 482 ATAGA-GTTCTTTCAAT-TCATCTGGAATGCCACCAATGGATTGGATTGAACCACGTGC- 538 Query 113834 TTGACCATGA---GATCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCC 113890 || | |||| ||| |||||| || || ||| | ||| | | | ||||||||| Sbjct 539 -TG-CAATGATTTGATTCTTCATCTCTGGTGTCCAAATACCCAATTCCATAAGATCCTCC 596 Query 113891 ACGAGATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTG 113950 | | || |||||||| | | ||||||||| || | || | || || || Sbjct 597 AACAATTGTTTATTGACGATAGTAAACTCACCAGCCAATACACGACGACTGTAAATGTTT 656 Query 113951 GTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAGGCTGTGGGC 114010 | |||||||| |||||||| || |||||||| | |||||| || || || || ||| Sbjct 657 GAAGTGTATGGTTCAAAGCATTCGTTGTTACCAAGGATTTGACTAGTTGAAGCGGTTGGC 716 Query 114011 ATGGGTGCCATGAGAAGGCTGTTACGGAGAC--CCTTT-TCCCTAATGCGTTCCTTGAGG 114067 || ||||| || | ||| |||||| | || ||||| | || || || ||| Sbjct 717 ATTGGTGCAATTAAGAGGGAGTTACGTAAACCACCTTTATTGACGATCTTATCTTTTAGG 776 Query 114068 GC-GTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACC 114126 | | || | || | ||| ||| | | | | | ||||||||| | || |||||||| Sbjct 777 TCTGCCCAATTCCAACGTGAACTTGGAGT-CACTTTCCACATATCGTATTGAAGGATACC 835 Query 114127 TTGGGAGGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCCGCCAATTC-GG 114185 || ||| ||||| || || | || | ||| ||||| || ||| |||||||| | Sbjct 836 TTTGGATGCTGGTGAGCCTTGGAAAGACTCATATGGACCATCACGTAGTGCCAATTCATG 895 Query 114186 AGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGG 114245 || || | |||||| ||| || || ||| || | |||| | | || Sbjct 896 AG-AGGCGGTCAAAGCTGCGAAATAGATGGTTTCAGCGATTTCAACATTTAATTTAGCGG 954 Query 114246 CCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGGACAC 114305 | | | |||||| | | || ||| || ||||| || | |||||||| || Sbjct 955 CGGCAACACTATCAAAAGGCATACGCATTTGAATGAAAACATCGGCTAAACCTTGGATAC 1014 Query 114306 CGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCACGGGATAAAAAT 114365 | | |||||||| |||||||| | ||| || || ||| |||| |||||||| | Sbjct 1015 CAATACCAATTGGACGATGTCTAAGATTTGAAGTTTTAGCCTCGACCACAGGATAAAAGT 1074 Query 114366 TCCTATC---GATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCT 114422 | | ||| |||||| || ||||| |||| | ||| ||||||||| || Sbjct 1075 TACGATCAATGATAAC---GTTGAGATTGACAGTGATCAACTTGGTGATTTCAAAGAGGA 1131 Query 114423 TTTCGTAATCAAA--ACTGC-------GA---GT----CTCTTC-ATTGAC--AT--ACT 114461 || | |||||| || | || || | | || ||||| || | | Sbjct 1132 ATTGATGATCAAACTCCTTCTCTTTTGGATCGGTTGAACCCGTCTTTTGACGAATGAATT 1191 Query 114462 TAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCA-GTGTACTCT 114520 | |||||||| ||||| || ||||| || || | | |||| || | | ||||| | Sbjct 1192 TTGGAAGGGCAATTGAGGCGAGATTGCAAACTGCAATTTCAT-CTGGTGATGTGTATTGA 1250 Query 114521 ATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTT 114580 || ||||| || || | ||| ||| ||||||| || | || | |||||| || || Sbjct 1251 ATGATTTCAGTGCAAAGATTACTACTACTAATGGTACCGAGATTTTGTTGATTGGATTTG 1310 Query 114581 GTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGA 114640 | || || || ||||| || | ||| |||| || || || || ||| || | | | Sbjct 1311 GAATTGCAAGCGTCCTTATACAAGATGAATGGTGTACCAGTTTCAACTTGTGATTCCATA 1370 Query 114641 ATAGCCTTCCAGA---CATCGGC--GGCTGGCAC-AGTGGCGTTGGCTCGCCCCTCCT-C 114693 || || ||| | | | || | | ||| | ||| | || | | | | Sbjct 1371 ATGGCGAACCAAAGTTCTTGTGCTTTGATTACACGTCTTGCGAGGTCTGG----TGTTGC 1426 Query 114694 CTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGC 114753 ||| |||||| ||||||||| | |||| | || | ||| || ||||| Sbjct 1427 CTCATACTTTAAGTAGAGGGCACGATGTTCTTGGGAATGAGTTTCAGCGAGACCGGGTGC 1486 Query 114754 CTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTC 114813 | | ||| || ||||| ||||| | |||| | || ||||||| ||| |||| || Sbjct 1487 TTCGTTTGGACAAAAGAGTGACCAATCACCATTTTGTTCGACACGCTCCATAAAGATATC 1546 Query 114814 TGGGATCCAGAGAGCTGAGAAGAGATCCCGA-CAGCGAGCTTCTTCATCCCCCTGATTGA 114872 | |||||| || |||| ||||| | | | | || || | | || || || Sbjct 1547 ACTAACCCAGAGGGCATAGAATAGATCTCTAGCTCTCATCTCCTCCTTGCCAGTGTTTTT 1606 Query 114873 GACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTG 114932 | | || | ||| || | || ||| || ||||| || |||| ||| || || | | Sbjct 1607 CTTG-AGATCGATAAACTCAAAGACATCGGCATGCCATGGCTCCAAGTATACGGCAAAGG 1665 Query 114933 ACCCCTTAC---GACGACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAA 114989 ||||| | | |||| | || | || || | || || |||| || || |||| Sbjct 1666 CACCCTTTCTTTTGCCACCACCTTGATCGACGTAACGAGCGGTATCATTGAAAACACGAA 1725 Query 114990 GCATTGGAATGATACCATCAGATTG-GCCATTTGTCCCCCGAATACGAGACTTATTGGCT 115048 ||||||| | | ||||| | | | |||||| || || |||||| | | | ||| Sbjct 1726 GCATTGGTACCAAACCAT-TGCTAGTGCCATTGGTACCACGAATATAACTTTGAGCGGCA 1784 Query 115049 CTGACATCATGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCC 115108 | | | ||| | | | ||||||||| || || | |||||| || || || | Sbjct 1785 CGAATTTTATGTACGGCAACACCAATACCACCGGCACTCTTTGAAATCAATGCACATTGT 1844 Query 115109 GTGAGACTGCCGTAGATCCCGTCGATCGAGTCACCCTT-ATTTGCGATAAGGAAGCAGCT 115167 | | || | ||||| || ||||| || || |||| ||||| | | ||| || Sbjct 1845 TTCAAGGTGTCATAGATACCATCGATTGAATCCTCCTTCATTTG-AACCAAGAAACATGA 1903 Query 115168 CGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAA 115224 ||||||||||| ||||||||||||||||| | |||||||| || || |||| Sbjct 1904 AGACATTTGTGGTGAAGGTGTACCAGCGTTGAATAATGTTGGTGTGGCATGTGTGAA 1960 >seq2472 Length=3280 Score = 84.2 bits (92), Expect = 3e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 30760 AATAATGTATATGGCCCAAATCAATATCCAGAAAAACTCATTCCAAAGTTTATACGACTA 30819 |||||||| ||||| || || ||||||| |||||||| |||||||| ||||| || Sbjct 2585 AATAATGTGTATGGTCCCAAACAATATCATGAAAAACTAATTCCAAAATTTATCAATTTA 2644 Query 30820 CTGAAAAATAATGAGAAATGTACAATTCATGGCACA 30855 | ||| ||||| ||||||||||||||||| ||| Sbjct 2645 TTATCAAAAAATGAAAAATGTACAATTCATGGTACA 2680 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597330370411880