Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20intermedium_20[genbank_20GCA_5F000277465.1_202012- 07-10] 3,111 sequences; 30,529,520 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq1461 118 1e-21 seq140 100 3e-16 seq52 91.5 2e-13 seq356 82.4 8e-11 >seq1461 Length=5937 Score = 118 bits (130), Expect = 1e-21 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| |||||||| | | || ||||| | ||| |||||||| || |||||||||| Sbjct 3893 ACCACCTCTTAATCTGAGTACTAAATGGAGAGTGGATTCCTTTTGGATGTTGTAATCAGA 3834 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 ||||| || |||| |||| || ||||||||||| ||||| || || ||||| | ||| Sbjct 3833 AAGAGTACGACCGTCTTCTAATTGTTTACCAGCGAAAATGAGACGTTGTTGGTCTGGTGG 3774 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCGTCGCCACCGTGTCGCTCGATTCCA 42159 | | ||||||| | ||| | ||||| || | || | | ||||||| ||| | Sbjct 3773 GATACCTTCCTTGT-CTTGAATCTTTGTCTTTACATTCTCGATGTTGTCGCTACCTTCAA 3715 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || | || |||||||| || || || || || |||||||||||||| Sbjct 3714 CTTCTAAGGTAATGGTTTTACCAGTGAGTGTTTTAACAAAGATTTGCAT 3666 Score = 93.3 bits (102), Expect = 5e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 || |||||||| | | || ||||| | || |||||||| ||||||||||||| Sbjct 4804 CCACCTCTTAATCTGAGTACTAAATGGAGAGTTGATTCCTTTTGGATATTGTAATCAGAA 4745 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 ||||| || | || |||| || |||||||| || || || || || || || | ||| Sbjct 4744 AGAGTACGACCATCTTCTAATTGTTTACCAGCAAAAATAAGACGTTGTTGATCTGGTGGG 4685 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | | ||||||| | ||| | ||||| || | || | | |||| || ||| || Sbjct 4684 ATACCTTCCTTGT-CTTGAATCTTTGTCTTTACATTCTCAATGTTGTCACTACCTTCAAC 4626 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||| || ||||| || || || || || || |||||||||||||| Sbjct 4625 TTCGAGAGTAATGGTCTTACCAGTAAGAGTTTTAACAAAGATTTGCAT 4578 Score = 82.4 bits (90), Expect = 8e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| |||||||| | | ||||| || | ||| || ||||| ||||||||||| | Sbjct 4121 ACCACCTCTTAATCTAAGTACCAAGTGAAGAGTGGATTCTTTTTGGATATTGTAATCGGA 4062 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 | || || | || |||| || ||||| ||||| ||||| || || || || | ||| Sbjct 4061 TAATGTACGACCATCTTCTAATTGTTTACCGGCGAAAATGAGACGTTGTTGATCTGGTGG 4002 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCGTCGCCACCGTGTCGCTCGATTCCA 42159 | | ||||| | | ||| | ||||| || | || | | |||| || ||| | Sbjct 4001 GATACCTTCCTTAT-CTTGAATCTTTGTCTTTACATTCTCAATGTTGTCACTACCTTCAA 3943 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | |||| || || ||||| || || || || || |||||||||||||| Sbjct 3942 CTTCGAGAGTAATAGTTTTACCAGTAAGGGTTTTAACAAAGATTTGCAT 3894 >seq140 Length=35707 Score = 100 bits (110), Expect = 3e-16 Identities = 162/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| |||||||| | | || ||||| | ||| || ||||| || |||||||||| Sbjct 26005 ACCACCTCTTAATCTAAGAACTAAATGAAGAGTGGATTCTTTTTGGATGTTGTAATCAGA 26064 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 ||||| || | || |||| || ||||||||||| || | || || ||||| | ||| Sbjct 26065 AAGAGTACGACCATCTTCTAATTGTTTACCAGCGAAAATTAATCTTTGTTGGTCTGGTGG 26124 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | | || ||||| |||||| ||| | || | | |||| || ||| || Sbjct 26125 AATACCTTCTTTGTCTTGGATTTTAGCTTTTACGTTCTCGATATTGTCACTGCCTTCAAC 26184 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTCA 42213 |||| ||||||||||| || || || || || ||||| ||||||||| ||| Sbjct 26185 TTCGAGAGTGATGGTTTTACCAGTAAGAGTTTTAACAAAAATTTGCATTATCA 26237 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| |||||||| | | || ||||| | ||| ||||||||||| || ||||||| Sbjct 25093 ACCACCTCTTAATCTAAGAACTAAATGGAGAGTGGATTCCTTTTGAATGTTATAATCAGA 25152 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 ||||| || | || |||| || ||||| || || || || || || ||||| | ||| Sbjct 25153 AAGAGTACGACCATCTTCTAATTGTTTACCGGCAAAGATAAGACGTTGTTGGTCTGGTGG 25212 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | | || ||||| |||||| ||||| | | | |||| || ||| || Sbjct 25213 GATACCTTCTTTGTCTTGGATTTTGGCTTTGACATTTTCAATGTTGTCACTACCTTCAAC 25272 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | || || ||||| || |||| || || |||||||||||||| Sbjct 25273 TTCAAGTGTAATTGTTTTACCAGTTAAAGTTTTAACAAAGATTTGCAT 25320 >seq52 Length=54870 Score = 91.5 bits (100), Expect = 2e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| |||||||| | || || ||||| | ||| ||| ||||| || |||||||||| Sbjct 45919 ACCACCTCTTAATCTTAAAACTAAATGGAGAGTGGACTCTTTTTGGATGTTGTAATCAGA 45860 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 ||||| || | || |||| |||||||||||||| || | || || ||||| | ||| Sbjct 45859 GAGAGTACGACCATCTTCTAATTGCTTACCAGCGAAAATTAATCTTTGTTGGTCTGGTGG 45800 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 42159 | | || ||| | ||| |||| | ||| | | | | | ||||| ||| | Sbjct 45799 GATAC-CTTCTTTATCTTGAATTTTGGCTTTTACATTTTCAATGTTATCGCTACCTTCAA 45741 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || | || |||||||| || |||| || || ||||| |||||||| Sbjct 45740 CTTCTAAGGTAATGGTTTTACCAGTTAAGGTTTTAACAAAAATTTGCAT 45692 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| |||||||| | || |||||||| | ||| || ||||| ||||| ||||||| Sbjct 45463 ACCACCTCTTAATCTTAAAACCAAATGGAGAGTGGATTCTTTTTGGATATTATAATCAGA 45404 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 ||||| || | || || | || ||||||||||| ||||| || || ||||| | ||| Sbjct 45403 GAGAGTACGACCATCTTCCAATTGTTTACCAGCGAAAATGAGACGTTGTTGGTCTGGTGG 45344 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 42159 | | || ||| | ||| |||| | ||| | | | | | || || ||| | Sbjct 45343 AATAC-CTTCTTTATCTTGAATTTTAGCTTTTACATTTTCAATGTTATCACTACCTTCAA 45285 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 | || | || |||||||| || |||| || || ||||| ||||||||| Sbjct 45284 CTTCTAAGGTAATGGTTTTACCAGTTAATGTTTTAACAAAAATTTGCATT 45235 Score = 86.0 bits (94), Expect = 7e-12 Identities = 161/237 (68%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 41972 AATTTATCGACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATT 42031 |||||| |||| |||||||| | || |||||||| | ||| |||||||| || || Sbjct 46384 AATTTAAAGACCACCTCTTAATCTTAAAACCAAATGGAGAGTGGATTCCTTTTGGATGTT 46325 Query 42032 GTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTG 42091 || |||| ||||| || | || || | || ||||||||||| || || || || || Sbjct 46324 ATAGTCAGAAAGAGTACGACCATCTTCCAATTGTTTACCAGCGAAAATAAGACGTTGTTG 46265 Query 42092 GTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCT 42151 || | ||| | | || || || ||| || ||||| || | | | || || Sbjct 46264 ATCTGGTGGGATACCTTCTTTATCTTGGATCTTGGCTTTGACGTTCTCAATGTTATCACT 46205 Query 42152 CGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||| || || | || || ||||| || |||| || || |||||||||||||| Sbjct 46204 GCCTTCAACCTCCAAGGTAATTGTTTTACCAGTTAAAGTTTTAACAAAGATTTGCAT 46148 >seq356 Length=19801 Score = 82.4 bits (90), Expect = 8e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| |||||||| | || || ||||| | ||| || ||||| ||||||||||||| Sbjct 11358 ACCACCTCTTAATCTTAAAACTAAATGAAGAGTGGATTCTTTTTGGATATTGTAATCAGA 11417 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 ||||| || | || |||| || ||||||||||| || | || || || || | ||| Sbjct 11418 GAGAGTACGACCATCTTCTAATTGTTTACCAGCGAAAATTAATCTTTGTTGATCTGGTGG 11477 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCG-TGTCGCTCGATTCCA 42159 | | || ||| | ||| | |||| || | | | || | | ||||| ||| | Sbjct 11478 AATAC-CTTCTTTATCTTGAATCTTTGCTTTAACATTTTCAATGTTATCGCTACCTTCAA 11536 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || | || || ||||| || || || || || ||||| |||||||| Sbjct 11537 CTTCCAATGTAATTGTTTTACCTGTAAGAGTTTTAACAAAAATTTGCAT 11585 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543191675812240