Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20intermedium_20[genbank_20GCA_5F000277465.1_202012- 07-10] 3,111 sequences; 30,529,520 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq356 98.7 9e-16 seq1461 89.7 5e-13 seq268 89.7 5e-13 seq52 84.2 2e-11 >seq356 Length=19801 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| | ||||| || || ||||| | || || |||||||| ||||||||||| Sbjct 11359 CCACCTCTTAATCTTAAAACTAAATGAAGAGTGGATTCTTTTTGGATATTGTAATCAGAG 11418 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || ||| ||| |||| ||||| |||||| | || |||| || ||||| || || Sbjct 11419 AGAGTACGACCATCTTCTAATTGTTTACCAGCGAAAATTAATCTTTGTTGATCTGGTGGA 11478 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || || || || | | ||| | | ||| || | | ||| | | | || ||| || || Sbjct 11479 ATACCTTCTTTAT-CTTGAATCTTTGCTTTAACATTTTCAATGTTATCGCTACCTTCAAC 11537 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| | || | ||||| || || |||||||| |||||||| ||||| Sbjct 11538 TTCCAATGTAATTGTTTTACCTGTAAGAGTTTTAACAAAAATTTGCAT 11585 >seq1461 Length=5937 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| | ||||| | ||||| || | || || |||||||| |||||||||||| Sbjct 4120 CCACCTCTTAATCTAAGTACCAAGTGAAGAGTGGATTCTTTTTGGATATTGTAATCGGAT 4061 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || ||| ||| |||| ||||| || ||| | || | || || ||||| || || Sbjct 4060 AATGTACGACCATCTTCTAATTGTTTACCGGCGAAAATGAGACGTTGTTGATCTGGTGGG 4001 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTG-CTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || || ||||| | | ||| | | || ||| | | || | | |||| ||| || || Sbjct 4000 ATACCTTCCTTAT-CTTGAATCTTTGTCTTTACATTCTCAATGTTGTCACTACCTTCAAC 3942 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||||| || | ||||| || || || ||||| ||||| || ||||| Sbjct 3941 TTCGAGAGTAATAGTTTTACCAGTAAGGGTTTTAACAAAGATTTGCAT 3894 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| | ||||| | || ||||| | || || || ||||| ||||||||||| Sbjct 4805 TCCACCTCTTAATCTGAGTACTAAATGGAGAGTTGATTCCTTTTGGATATTGTAATCAGA 4746 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | || ||| ||| |||| ||||| ||||| | || | || || ||||| || || Sbjct 4745 AAGAGTACGACCATCTTCTAATTGTTTACCAGCAAAAATAAGACGTTGTTGATCTGGTGG 4686 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTG-CTTGAGTTGTTCGACGGTGTCCGTACTCTCGA 127064 || || ||||||| | ||| | | || ||| | | || | | |||| ||| || | Sbjct 4685 GATACCTTCCTTGT-CTTGAATCTTTGTCTTTACATTCTCAATGTTGTCACTACCTTCAA 4627 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||||| || | || || || || |||||||| ||||| || ||||| Sbjct 4626 CTTCGAGAGTAATGGTCTTACCAGTAAGAGTTTTAACAAAGATTTGCAT 4578 >seq268 Length=24546 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || || || ||||| | || || || ||||||||||||||||| Sbjct 17379 CCACCACGAAGTCTTAAAACTAAATGAAGTGTTGATTCCTTTTGAATATTGTAATCTGAT 17438 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || ||| ||| || | ||||| ||||| |||| |||| || ||||| ||||| Sbjct 17439 AAAGTACGACCATCTTCCAATTGTTTACCAGCAAAGATTAATCTTTGTTGATCTGGAGGA 17498 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || || ||||| | ||| ||| ||| || | | ||| | | || | || || || Sbjct 17499 ATTCCTTCCTTAT-TTTGAATTTTTGCTTTTACATTTTCAATATTATCTGAACCTTCAAC 17557 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| | || | ||||| || || | |||||| |||||||| ||||| Sbjct 17558 TTCAAGAGTTATGGTTTTTCCAGTTAAAGTTTTAACAAAAATTTGCAT 17605 >seq52 Length=54870 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| | ||||| || || ||||| | || ||||||||||| || |||||||| Sbjct 45918 CCACCTCTTAATCTTAAAACTAAATGGAGAGTGGACTCTTTTTGGATGTTGTAATCAGAG 45859 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || ||| ||| |||| || || |||||| | || |||| || || || || || Sbjct 45858 AGAGTACGACCATCTTCTAATTGCTTACCAGCGAAAATTAATCTTTGTTGGTCTGGTGGG 45799 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || || || || | | ||| ||| || || | | ||| | | | || ||| || || Sbjct 45798 ATACCTTCTTTAT-CTTGAATTTTGGCTTTTACATTTTCAATGTTATCGCTACCTTCAAC 45740 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| | ||| | ||||| || || | ||||| |||||||| ||||| Sbjct 45739 TTCTAAGGTAATGGTTTTACCAGTTAAGGTTTTAACAAAAATTTGCAT 45692 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475482308962640