Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20intermedium_20[genbank_20GCA_5F000277465.1_202012- 07-10] 3,111 sequences; 30,529,520 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq2826 181 1e-40 seq1790 91.5 2e-13 seq2472 84.2 3e-11 >seq2826 Length=2534 Score = 181 bits (200), Expect = 1e-40 Identities = 1131/1777 (64%), Gaps = 82/1777 (5%) Strand=Plus/Plus Query 115558 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 115617 || || |||||||| || ||||| | || | |||||| | ||| | |||||||||| Sbjct 303 CGAAGATAGTACATACCAGTCTTTAAACCTTTCTTCCAAGAATAAAAGTGCATTGAGGTG 362 Query 115618 AACTTGGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAG 115677 | |||| | ||||| | ||||| | ||| | |||||| |||||| ||||| Sbjct 363 AGTTTGGCAAAGGTTGGTTCAGCGATGAAAACGTTGAAACTTTGACTTTGATCAATGAAA 422 Query 115678 CGTCCCCGATCCGCCGCCATATCAATCACA-TCCTTCATCTTGATTTCCCACACAGTTCT 115736 || ||||| || ||||||||||| | | | ||| | |||||||| || ||| | Sbjct 423 GCACCACGATCAGCGGCCATATCAATGAGAGTTCTTTGAC-GAATTTCCCAAACGGTTTT 481 Query 115737 GTAGAGGTTCTT--AATATCATCTGGGATATCCACGATATTTTGGATAGAGCCACCTGCC 115794 |||| |||||| ||| |||||||| || | | || |||||| || |||| ||| Sbjct 482 ATAGA-GTTCTTTCAAT-TCATCTGGAATGCCACCAATGGATTGGATTGAACCACGTGC- 538 Query 115795 TTGACCATGA---GATCCTTCATATCCTTTGACCAGAGACCAATCTTCTTGAGATCCTCC 115851 || | |||| ||| |||||| || || ||| | ||| | | | | ||||||||| Sbjct 539 -TG-CAATGATTTGATTCTTCATCTCTGGTGTCCAAATACCCAATTCCATAAGATCCTCC 596 Query 115852 ACGAGGTGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTG 115911 | | || |||||||| | | ||||||||| || | || | || ||||| Sbjct 597 AACAATTGTTTATTGACGATAGTAAACTCACCAGCCAATACACGACGACTGTAAATGTTT 656 Query 115912 GTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGC 115971 | |||||||| |||||||| || |||||||| | |||||| || || || || ||| Sbjct 657 GAAGTGTATGGTTCAAAGCATTCGTTGTTACCAAGGATTTGACTAGTTGAAGCGGTTGGC 716 Query 115972 ATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATG-CG-----TTCCTTG 116025 || ||||| || | ||| ||| || | || | || || || || || || Sbjct 717 ATTGGTGCAATTAAGAGGGAGTTACGTAAAC---CACCTTTATTGACGATCTTATCTTTT 773 Query 116026 AGGGC-GTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCTCCCACATATCAAACTGGAGGAT 116084 ||| | | || | || | ||| ||| | | | | | ||||||||| | || ||||| Sbjct 774 AGGTCTGCCCAATTCCAACGTGAACTTGGAGT-CACTTTCCACATATCGTATTGAAGGAT 832 Query 116085 ACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTC 116144 ||||| ||| ||||| || || | || | ||||||||| || ||| |||||||| Sbjct 833 ACCTTTGGATGCTGGTGAGCCTTGGAAAGACTCATATGGACCATCACGTAGTGCCAATTC 892 Query 116145 -GGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCT 116203 ||| || | |||||| ||| || || ||| || | |||| | | Sbjct 893 ATGAG-AGGCGGTCAAAGCTGCGAAATAGATGGTTTCAGCGATTTCAACATTTAATTTAG 951 Query 116204 TGGCCTCGTCGGAATCAAACGCGAGACGGCACAAAATAAATACATCCGCGAGACCTTGGA 116263 ||| | | |||||| | | ||| ||| || ||||| || | |||||||| Sbjct 952 CGGCGGCAACACTATCAAAAGGCATACGCATTTGAATGAAAACATCGGCTAAACCTTGGA 1011 Query 116264 CACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCACGGGATAAA 116323 ||| | |||||||| |||||||| | ||| || || ||| |||| ||||||| Sbjct 1012 TACCAATACCAATTGGACGATGTCTAAGATTTGAAGTTTTAGCCTCGACCACAGGATAAA 1071 Query 116324 AATTCCTATC---GATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAA 116380 | || | ||| |||||| || ||||| |||| | ||| ||||||||| | Sbjct 1072 AGTTACGATCAATGATAAC---GTTGAGATTGACAGTGATCAACTTGGTGATTTCAAAGA 1128 Query 116381 GCTTTTCGTAATCAAA--ACTGC-------GA---GT----CTCTTC-ATTGAC--AT-- 116419 | || | |||||| || | || || | | || ||||| || Sbjct 1129 GGAATTGATGATCAAACTCCTTCTCTTTTGGATCGGTTGAACCCGTCTTTTGACGAATGA 1188 Query 116420 ACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCA-GTGTAC 116478 | || |||||||| ||||| || ||||| || || | | |||| || | | ||||| Sbjct 1189 ATTTTGGAAGGGCAATTGAGGCGAGATTGCAAACTGCAATTTCAT-CTGGTGATGTGTAT 1247 Query 116479 TCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGAC 116538 | || ||||| || || | ||| ||| ||||||| || | || | |||||| || Sbjct 1248 TGAATGATTTCAGTGCAAAGATTACTACTACTAATGGTACCGAGATTTTGTTGATTGGAT 1307 Query 116539 TTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTG 116598 || | || || || ||||| || | || |||| || || || || ||| || | Sbjct 1308 TTGGAATTGCAAGCGTCCTTATACAAGATGAATGGTGTACCAGTTTCAACTTGTGATTCC 1367 Query 116599 AGAATAGCCTTCCA---TACATCGGC--GGCTGGCAC-AGTGGCGTTGGCTCGCCCCTCC 116652 | ||| || ||| | | | || | | ||| | ||| | || | | Sbjct 1368 ATAATGGCGAACCAAAGTTCTTGTGCTTTGATTACACGTCTTGCGAGGTCTGG----TGT 1423 Query 116653 T-CCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGCCTCTGAGAGCCCTGG 116711 | |||| |||||| ||||||||| | |||| || || | ||| || || Sbjct 1424 TGCCTCATACTTTAAGTAGAGGGCACGATGTTCTTGGGAATGAGTTTCAGCGAGACCGGG 1483 Query 116712 TGCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAG 116771 ||| | | |||||| ||||| ||||| | |||| | || || |||| ||| |||| Sbjct 1484 TGCTTCGTTTGGACAAAAGAGTGACCAATCACCATTTTGTTCGACACGCTCCATAAAGAT 1543 Query 116772 GTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGA-CAGCGAGCTTCTTCATCCCCCTGAT 116830 || | |||||| || |||| ||||| | | | | || || | | || || | Sbjct 1544 ATCACTAACCCAGAGGGCATAGAATAGATCTCTAGCTCTCATCTCCTCCTTGCCAGTGTT 1603 Query 116831 TGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGA 116890 | | | || | ||| || | || ||| || ||||| || |||| ||| || || | Sbjct 1604 TTTCTTG-AGATCGATAAACTCAAAGACATCGGCATGCCATGGCTCCAAGTATACGGCAA 1662 Query 116891 TTGACCCCTTGC---GACGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGC 116947 | ||||| | | |||| | || | || || | || || | || || || | Sbjct 1663 AGGCACCCTTTCTTTTGCCACCACCTTGATCGACGTAACGAGCGGTATCATTGAAAACAC 1722 Query 116948 GAAGCATTGGAATGATACCATCAGATTG-GCCATTTGTCCCCCGAATACGAGACTTGTTG 117006 |||||||||| | | ||||| | | | |||||| || || |||||| | | | Sbjct 1723 GAAGCATTGGTACCAAACCAT-TGCTAGTGCCATTGGTACCACGAATATAACTTTGAGCG 1781 Query 117007 GCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCAC 117066 || | | | || | | | ||||||||| || || | |||||| || ||| || Sbjct 1782 GCACGAATTTTATGTACGGCAACACCAATACCACCGGCACTCTTTGAAATCAATGCACAT 1841 Query 117067 TCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTT-ATTTGCGATGAGGAAGCA 117125 | | | || | ||||| |||||||| || || |||| ||||| | | ||| || Sbjct 1842 TGTTTCAAGGTGTCATAGATACCATCGATTGAATCCTCCTTCATTTG-AACCAAGAAACA 1900 Query 117126 GCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAA 117185 ||||||||||| ||||||||||||||||| | |||||||| || || |||| Sbjct 1901 TGAAGACATTTGTGGTGAAGGTGTACCAGCGTTGAATAATGTTGGTGTGGCATGTGTGAA 1960 Query 117186 CA-TACCTTGG---GACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGT 117241 | | || | ||| || ||||| | | |||| |||||| || || | Sbjct 1961 TAGTTTCTCCGATAGACGTC----GATAGGTGTTGATCGCAGACTCAATGTCCTCGCCAT 2016 Query 117242 GAATACCGATTGAGACCCGCATAAACATGTATTGGGG 117278 | ||||| || || || ||||| ||||| | ||| || Sbjct 2017 GGATACCAATGGAAACACGCATCAACATATGTTGTGG 2053 >seq1790 Length=4853 Score = 91.5 bits (100), Expect = 2e-13 Identities = 145/202 (72%), Gaps = 7/202 (3%) Strand=Plus/Minus Query 12791 GAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCG---C 12847 ||| |||||||| ||| ||| |||||||| | || | ||||||||||||||| | | Sbjct 1616 GAAACCATCCATTTCAACCAATAGTTGATTTAGAGTGTTTTCACGTTCATCATTTGAACC 1557 Query 12848 GGGCATACCACCCGCACTGCGTTGCT-TACCGACGGCGTCAATTTCGTCAATGAAAACGA 12906 | | |||||| || | ||||| |||| | || || ||||| |||||||| || | Sbjct 1556 AGAGAAACCACCTTTACCTC-TTGCTCTACCAATTGCATCGATTTCATCAATGAATACAA 1498 Query 12907 TACACGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTC-TCTTGGCACCGACA 12965 |||| ||| ||| | | || |||||| | ||||| || | | ||| ||| ||| Sbjct 1497 TACATGGTGCATTCTTTCTTGCTTGTTCAAATAAATCTCTAACACGTGATGG-ACCAACA 1439 Query 12966 CCCACAAACATCTCCACAAAAT 12987 || ||||||||||| || |||| Sbjct 1438 CCAACAAACATCTCTACGAAAT 1417 >seq2472 Length=3280 Score = 84.2 bits (92), Expect = 3e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 32690 AATAATGTATATGGCCCAAATCAATATCCGGAAAAACTCATTCCAAAGTTTATACGACTA 32749 |||||||| ||||| || || ||||||| |||||||| |||||||| ||||| || Sbjct 2585 AATAATGTGTATGGTCCCAAACAATATCATGAAAAACTAATTCCAAAATTTATCAATTTA 2644 Query 32750 CTGAAAAATAATGAGAAATGTACAATTCATGGCACA 32785 | ||| ||||| ||||||||||||||||| ||| Sbjct 2645 TTATCAAAAAATGAAAAATGTACAATTCATGGTACA 2680 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613483342238760