Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20intermedium_20[genbank_20GCA_5F000277465.1_202012- 07-10] 3,111 sequences; 30,529,520 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq140 95.1 3e-14 seq64 95.1 3e-14 seq52 95.1 3e-14 seq1461 91.5 3e-13 seq356 86.0 1e-11 >seq140 Length=35707 Score = 95.1 bits (104), Expect = 3e-14 Identities = 151/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 ||| || || | |||||||| || |||||||| | ||| || |||| | ||| | || Sbjct 25789 TCTAAGAACTAAATGGAGAGTAGATTCCTTTTGAATGTTATAATCAGAAAGAGTACGACC 25848 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 |||||| | || || ||||| ||||| ||||| || ||||| || || |||||| Sbjct 25849 ATCTTCTAATTGTTTACCGGCAAAGATAAGACGTTGTTGGTCTGGTGGGATACCTTCTTT 25908 Query 199534 CTCCTGAATCTTTTGCTTC-ACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGA 199592 || || || ||| |||| || ||| | | | || | ||| || || || |||| Sbjct 25909 GTCTTGGAT-TTTGGCTTTGACATTTTCAATGTTATCGGAACCTTCGACTTCTAATGTGA 25967 Query 199593 TCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 | || ||||| ||||||||||| || || ||||| Sbjct 25968 TTGTTTTACCAGTGAGAGTTTTAACGAAGATTTG 26001 Score = 86.0 bits (94), Expect = 1e-11 Identities = 149/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 ||| || || | || ||||| || || ||||||| |||||| |||| | ||| | || Sbjct 26017 TCTAAGAACTAAATGAAGAGTGGATTCTTTTTGGATGTTGTAATCAGAAAGAGTACGACC 26076 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 |||||| | || || || ||||| || | | || ||||| || ||| |||||| Sbjct 26077 ATCTTCTAATTGTTTACCAGCGAAAATTAATCTTTGTTGGTCTGGTGGAATACCTTCTTT 26136 Query 199534 CTCCTGAATCTTTTGCTTC-ACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGA 199592 || || || ||| |||| ||| |||| |||| | ||| || || | |||| Sbjct 26137 GTCTTGGAT-TTTAGCTTTTACGTTCTCGATATTGTCACTGCCTTCAACTTCGAGAGTGA 26195 Query 199593 TCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 | || ||||| || |||||||| ||||||||||| Sbjct 26196 TGGTTTTACCAGTAAGAGTTTTAACAAAAATTTG 26229 >seq64 Length=50952 Score = 95.1 bits (104), Expect = 3e-14 Identities = 143/201 (71%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486 || ||||| || || ||||| | ||| ||||||| | ||| | |||||||| | || Sbjct 24308 TGAAGAGTTGATTCTTTTTGAATGTTATAGTCAGAGAGAGTACGACCATCTTCTAATTGT 24367 Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546 || || || ||||||||||| || || || || ||| |||||| || ||||| ||| Sbjct 24368 TTACCAGCAAAGATGAGACGTTGTTGATCTGGTGGAATACCTTCTTTATCTTGAAT-TTT 24426 Query 199547 TGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGT 199605 || || || ||| | | | || | ||| || ||||| || || || ||||| || Sbjct 24427 GGCTTTTACATTTTCAATGTTATCACTACCTTCAACTTCCAAAGTAATTGTTTTACCAGT 24486 Query 199606 GAGAGTTTTCACAAAAATTTG 199626 | |||||| ||||||||||| Sbjct 24487 TAAAGTTTTAACAAAAATTTG 24507 >seq52 Length=54870 Score = 95.1 bits (104), Expect = 3e-14 Identities = 143/201 (71%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486 |||||||| || || ||||||| || || |||| | ||| | |||||||||| || Sbjct 45438 TGGAGAGTGGATTCTTTTTGGATATTATAATCAGAGAGAGTACGACCATCTTCCAATTGT 45379 Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546 || || ||||| |||||||| || ||||| || ||| |||||| || ||||| ||| Sbjct 45378 TTACCAGCGAAAATGAGACGTTGTTGGTCTGGTGGAATACCTTCTTTATCTTGAAT-TTT 45320 Query 199547 TGCTTC-ACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGT 199605 |||| || ||| | | | || | ||| || || || || || || ||||| || Sbjct 45319 AGCTTTTACATTTTCAATGTTATCACTACCTTCAACTTCTAAGGTAATGGTTTTACCAGT 45260 Query 199606 GAGAGTTTTCACAAAAATTTG 199626 | ||||| ||||||||||| Sbjct 45259 TAATGTTTTAACAAAAATTTG 45239 Score = 91.5 bits (100), Expect = 3e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 ||| || || | ||||||||| || || ||||||| ||| ||||| | | ||| | || Sbjct 46135 TCTAAGAACTAAGTGGAGAGTGGATTCTTTTTGGATGTTATAGTCGGAGAGAGTACGACC 46076 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 |||||| | || || || ||||| || ||||| || || || || || |||||| Sbjct 46075 ATCTTCTAATTGTTTACCAGCGAAAATAAGACGTTGTTGATCTGGTGGGATACCTTCTTT 46016 Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593 || |||||||| || ||| || | | | || | ||| || ||||| || || Sbjct 46015 ATCTTGAATCTTGGCTTTGACGTTCTCAATGTTATCACTACCTTCAACTTCCAATGTAAT 45956 Query 199594 CGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || ||||| || | ||||| ||||||||||| Sbjct 45955 TGTTTTACCAGTTAAGGTTTTAACAAAAATTTG 45923 Score = 86.0 bits (94), Expect = 1e-11 Identities = 141/201 (70%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486 |||||||| ||||| ||||||| |||||| |||| | ||| | |||||||| | ||| Sbjct 45894 TGGAGAGTGGACTCTTTTTGGATGTTGTAATCAGAGAGAGTACGACCATCTTCTAATTGC 45835 Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546 || || ||||| || | | || ||||| || || |||||| || ||||| ||| Sbjct 45834 TTACCAGCGAAAATTAATCTTTGTTGGTCTGGTGGGATACCTTCTTTATCTTGAAT-TTT 45776 Query 199547 TGCTTC-ACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGT 199605 |||| || ||| | | | || | ||| || || || || || || ||||| || Sbjct 45775 GGCTTTTACATTTTCAATGTTATCGCTACCTTCAACTTCTAAGGTAATGGTTTTACCAGT 45716 Query 199606 GAGAGTTTTCACAAAAATTTG 199626 | ||||| ||||||||||| Sbjct 45715 TAAGGTTTTAACAAAAATTTG 45695 >seq1461 Length=5937 Score = 91.5 bits (100), Expect = 3e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 ||| || || | |||||||| || |||||||| | |||||| |||| | ||| | || Sbjct 3653 TCTGAGTACTAAATGGAGAGTGGATTCCTTTTGAATGTTGTAATCAGAGAGAGTACGACC 3594 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 |||||||| || || || ||||| || ||||| || ||||| || || ||||| Sbjct 3593 ATCTTCCAATTGTTTACCAGCGAAAATAAGACGTTGTTGGTCTGGTGGGATACCTTCCTT 3534 Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593 || ||||| || || || ||| | |||| | |||||| || | || || Sbjct 3533 ATCTTGAATTTTGGTTTTTACATTTTCAATATTGTCGGAACCTTCTACTTCGAGAGTAAT 3474 Query 199594 CGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || |||||||| ||||||||||| Sbjct 3473 TGTTTTTCCAGTAAGAGTTTTAACAAAAATTTG 3441 >seq356 Length=19801 Score = 86.0 bits (94), Expect = 1e-11 Identities = 139/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486 || ||||| || || ||||||| ||||| |||| | ||| | |||||||| | || Sbjct 11383 TGAAGAGTGGATTCTTTTTGGATATTGTAATCAGAGAGAGTACGACCATCTTCTAATTGT 11442 Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546 || || ||||| || | | || || || || ||| |||||| || ||||||||| Sbjct 11443 TTACCAGCGAAAATTAATCTTTGTTGATCTGGTGGAATACCTTCTTTATCTTGAATCTTT 11502 Query 199547 TGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTG 199606 || || ||| | | | || | ||| || ||||| || || || ||||| || Sbjct 11503 GCTTTAACATTTTCAATGTTATCGCTACCTTCAACTTCCAATGTAATTGTTTTACCTGTA 11562 Query 199607 AGAGTTTTCACAAAAATTTG 199626 |||||||| ||||||||||| Sbjct 11563 AGAGTTTTAACAAAAATTTG 11582 Score = 86.0 bits (94), Expect = 1e-11 Identities = 149/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 ||| || || | ||||||||| || || ||||| | ||| || || | || || | || Sbjct 11598 TCTAAGAACTAAGTGGAGAGTGGATTCTTTTTGAATGTTATAATCTGATAAGGTACGACC 11657 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 |||||| | || || || ||||| || | | || ||||| || ||| |||||| Sbjct 11658 ATCTTCTAATTGTTTACCAGCGAAAATTAATCTTTGTTGGTCTGGTGGAATACCTTCTTT 11717 Query 199534 CTCCTGAATCTTTTGCTTCA-CGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGA 199592 || ||||| ||| |||| | | ||| | | | || | ||| || || || |||| Sbjct 11718 ATCTTGAAT-TTTAGCTTTAACATTTTCAATGTTATCAGAACCTTCAACTTCTAAAGTGA 11776 Query 199593 TCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 | || ||||| || |||||||| ||||||||||| Sbjct 11777 TGGTTTTACCTGTAAGAGTTTTAACAAAAATTTG 11810 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178874608553437