Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20intermedium_20[genbank_20GCA_5F000277465.1_202012- 07-10] 3,111 sequences; 30,529,520 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq192 111 1e-19 seq52 98.7 7e-16 seq89 95.1 8e-15 seq25 91.5 1e-13 seq140 89.7 4e-13 seq64 89.7 4e-13 seq1461 86.0 4e-12 seq356 86.0 4e-12 seq74 86.0 4e-12 >seq192 Length=29408 Score = 111 bits (122), Expect = 1e-19 Identities = 109/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 42511 TATGTTACCTAAATCACCAAGATGTCGTTCTTCATCATGCGGTCCGCCGTGTTCTTTATG 42570 ||| |||||||||||||||| ||| || | ||||||| ||| | || |||||||| | Sbjct 21410 TATATTACCTAAATCACCAACATGACGATTCTCATCATTTGGTGCACCATGTTCTTTTTT 21469 Query 42571 AAAAGGATTAAAATGTTCACCAGCCGATGTACATCCATTGGTGGTATCTCCAAATTCATG 42630 |||||| | || | || || ||| ||||||||||||| ||||||||||||||||| Sbjct 21470 CTCTGGATTATAGTGAGCTCCTGCTGATATACATCCATTGGTTGTATCTCCAAATTCATG 21529 Query 42631 TATATGAAAACCGTGATAACC 42651 | |||||| || || | ||| Sbjct 21530 AACATGAAATCCATGTTTACC 21550 >seq52 Length=54870 Score = 98.7 bits (108), Expect = 7e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 39511 ACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCC 39570 |||||||| | |||| ||| ||||| || ||||| || | | | || |||| ||| Sbjct 46356 ACCAAATGGAGAGTGGATTCCTTTTGGATGTTATAGTCAGAAAGAGTACGACCATCTTCC 46297 Query 39571 AATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCAT 39630 |||||||| || | ||||| | ||| || ||||| | || | |||||||| || Sbjct 46296 AATTGTTTACCAGCGAAAATAAGACGTTGTTGATCTGGTGGGATACCTTCTTTATCTTGG 46237 Query 39631 ATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTA 39690 || || ||| | || | | | || || ||| || ||||| |||||||||||| Sbjct 46236 ATCTTGGCTTTGACGTTCTCAATGTTATCACTGCCTTCAACCTCCAAGGTAATTGTTTTA 46177 Query 39691 CCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || ||||||||||| || ||||| ||||| Sbjct 46176 CCAGTTAAAGTTTTAACAAAGATTTGCAT 46148 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 39511 ACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCC 39570 || ||||| | |||| ||||||||| ||||| ||||||| | | || |||| || Sbjct 45672 ACTAAATGGAGAGTGGATTCTTTTTGGATATTGTAATCGGAGAGAGTACGACCATCTTCT 45613 Query 39571 AATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTC--GC 39628 |||||||| || | ||||| | ||| || || || | || | |||||||| || | Sbjct 45612 AATTGTTTACCAGCGAAAATAAGACGTTGTTGGTCTGGTGGGATACCTTCTTTATCTTGG 45553 Query 39629 ATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTT 39688 || || | || || ||| || | | | | | ||| || || || || ||||||| Sbjct 45552 ATCTTGGCTTTTACATTTTCGATATTAT--CGGAACCTTCAACCTCTAAGGTGATTGTTT 45495 Query 39689 TACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 |||| ||||| ||||| || ||||| ||||| Sbjct 45494 TACCAGTTAAGGTTTTAACAAAGATTTGCAT 45464 >seq89 Length=43963 Score = 95.1 bits (104), Expect = 8e-15 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 39528 TTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAA 39587 ||| ||||| || |||||||||| ||| || |||| || |||||||| ||| |||| Sbjct 14301 TTCCTTTTGGATGTTATAATCGGATAAAGTACGACCATCTTCTAATTGTTTACCGGCAAA 14242 Query 39588 AATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGT 39647 || | ||| || ||||| | || | ||||||||||| || || ||| | | Sbjct 14241 GATAAGACGTTGTTGATCTGGTGGGATACCTTCTTTGTCTTGAATCTTGGCTTTGACGTT 14182 Query 39648 CGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTAC 39707 | | |||||| | ||| || || | ||| || |||||||| ||||| ||||| || Sbjct 14181 TTCGATGTTGTCTGAACCTTCAACTTCGAGAGTGATGGTTTTACCAGTTAAGGTTTTAAC 14122 Query 39708 GAAGATCTGCAT 39719 |||||| ||||| Sbjct 14121 GAAGATTTGCAT 14110 >seq25 Length=66450 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 42512 ATGTTACCTAAATCACCAAGATGTCGTTCTTCATCATGCGGTCCGCCGTGTTCTTTATGA 42571 || |||||||||||||||| || ||| | |||||| ||| | || ||||| |||| Sbjct 15138 ATATTACCTAAATCACCAATGTGACGTACAACATCATTTGGTGCACCATGTTCAAGATGA 15197 Query 42572 AAAGGATTAAAATGTTCACCAGCCGATGTACATCCATTGGTGGTATCTCCAAATTCATGT 42631 | ||||| ||||||| || || |||||||||| | ||||| ||||| |||||| Sbjct 15198 AGTGGATTGTAATGTTCTCCGGCACTAATACATCCATTACTTGTATCCCCAAACTCATGT 15257 Query 42632 ATATGAAAACCGTGATAACC 42651 | ||||| ||| || | ||| Sbjct 15258 ACATGAATACCATGTTGACC 15277 >seq140 Length=35707 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 39508 AGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCG 39567 || || ||||| | |||| ||| ||||| || |||||||| | | | || |||| Sbjct 25109 AGAACTAAATGGAGAGTGGATTCCTTTTGAATGTTATAATCAGAAAGAGTACGACCATCT 25168 Query 39568 TCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCG 39627 || |||||||| ||| |||| || | ||| || || || | || | ||||||||||| Sbjct 25169 TCTAATTGTTTACCGGCAAAGATAAGACGTTGTTGGTCTGGTGGGATACCTTCTTTGTCT 25228 Query 39628 CATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTT 39687 ||||| ||| | | | | |||| | ||| || || | ||||||||| Sbjct 25229 TGGATTTTGGCTTTGACATTTTCAATGTTGTCACTACCTTCAACTTCAAGTGTAATTGTT 25288 Query 39688 TTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||| ||||||||||| || ||||| ||||| Sbjct 25289 TTACCAGTTAAAGTTTTAACAAAGATTTGCAT 25320 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 39508 AGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCG 39567 || || || || | |||| ||||||||| || || ||||| | | | || |||| Sbjct 25565 AGAACTAAGTGGAGAGTGGATTCTTTTTGGATGTTGTAATCAGAAAGAGTACGACCATCT 25624 Query 39568 TCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCG 39627 ||||||||||| || | ||||| | ||| || || || | || | ||||||||||| Sbjct 25625 TCCAATTGTTTACCAGCGAAAATGAGACGTTGTTGGTCTGGTGGGATACCTTCTTTGTCT 25684 Query 39628 CATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTT 39687 ||||| ||| | | | | | || | | ||| || ||||| || |||||| Sbjct 25685 TGGATTTTGGCTTTGACATTTTCAATGTTATCAGAACCTTCAACTTCCAATGTGATTGTT 25744 Query 39688 TTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||| ||||||||||| || ||||| ||||| Sbjct 25745 TTACCAGTTAAAGTTTTAACAAAGATTTGCAT 25776 >seq64 Length=50952 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 39511 ACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCC 39570 |||||||| | |||| ||| ||||| || ||||| |||| | | || |||| || Sbjct 24074 ACCAAATGGAGAGTGGATTCCTTTTGGATGTTATAGTCGGAGAGAGTACGACCATCTTCT 24133 Query 39571 AATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCAT 39630 |||||||| || | ||||| | ||| || ||||| | || | |||||||| || Sbjct 24134 AATTGTTTACCAGCGAAAATAAGACGTTGTTGATCTGGTGGGATACCTTCTTTATCTTGG 24193 Query 39631 ATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTA 39690 || || ||| | || | | | || || ||| || ||||| |||||||||||| Sbjct 24194 ATCTTGGCTTTGACATTCTCAATGTTATCACTGCCTTCAACTTCCAATGTAATTGTTTTA 24253 Query 39691 CCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || ||||| ||||| || || || ||||| Sbjct 24254 CCAGTTAAGGTTTTAACAAAAATTTGCAT 24282 >seq1461 Length=5937 Score = 86.0 bits (94), Expect = 4e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 39508 AGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCG 39567 ||||| ||||| | |||| ||| ||||| || || ||||| | | | || |||| Sbjct 4561 AGTACTAAATGGAGAGTGGATTCCTTTTGGATGTTGTAATCAGAAAGAGTACGACCATCT 4502 Query 39568 TCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCG 39627 ||||||||||| ||| | ||||| | ||| || ||||| | || | ||||| ||||| Sbjct 4501 TCCAATTGTTTACCGGCGAAAATGAGACGTTGTTGATCTGGTGGGATACCTTCCTTGTCT 4442 Query 39628 CATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTT 39687 ||||| |||| || | | |||| | ||| || || || ||||| ||| Sbjct 4441 TGAATTTTGGTCTTAACATTCTCAATGTTGTCACTACCTTCAACTTCTAAGGTAATGGTT 4382 Query 39688 TTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||| || | ||||| ||||| || ||||| Sbjct 4381 TTACCAGTGAGGGTTTTGACGAAAATTTGCAT 4350 >seq356 Length=19801 Score = 86.0 bits (94), Expect = 4e-12 Identities = 147/212 (69%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 39511 ACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCC 39570 || ||||| | |||| ||||||||| ||||| ||||| | | | || |||| || Sbjct 11377 ACTAAATGAAGAGTGGATTCTTTTTGGATATTGTAATCAGAGAGAGTACGACCATCTTCT 11436 Query 39571 AATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCAT 39630 |||||||| || | |||||||| | || ||||| | || | |||||||| || Sbjct 11437 AATTGTTTACCAGCGAAAATTAATCTTTGTTGATCTGGTGGAATACCTTCTTTATCTTGA 11496 Query 39631 ATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCT---TTCCACGTCCAAAGTAATTGTT 39687 || ||| ||||| | | | ||| |||| ||| || ||||| ||||||||| Sbjct 11497 ATCTTTGCTTTAACATTTTCAA---TGTTATCGCTACCTTCAACTTCCAATGTAATTGTT 11553 Query 39688 TTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||| || | |||||| || || || ||||| Sbjct 11554 TTACCTGTAAGAGTTTTAACAAAAATTTGCAT 11585 >seq74 Length=49289 Score = 86.0 bits (94), Expect = 4e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 42512 ATGTTACCTAAATCACCAAGATGTCGTTCTTCATCATGCGGTCCGCCGTGTTCTTTATGA 42571 ||||||||||||||||||| ||| || ||||||||| || | || || | |||| Sbjct 40775 ATGTTACCTAAATCACCAACATGACGATCTTCATCAGTTGGGGCACCATGGTTTTTACCG 40834 Query 42572 AAAGGATTAAAATGTTCACCAGCCGATGTACATCCATTGGTGGTATCTCCAAATTCATGT 42631 || || ||||||||| ||| || |||| |||||||| ||||| || || |||| Sbjct 40835 AATGGGTTAAAATGTGGACCTGCACTAATACAACCATTGGTAGTATCACCGAAAGCATGA 40894 Query 42632 ATATGAAAACCGTGATAACC 42651 | || |||||||| | ||| Sbjct 40895 ACGTGGAAACCGTGTTCACC 40914 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347356429373063